62194 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 62194 T48813_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
62194 RRM 5 67
62194 RRM 112 177

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB06486.1 Alternaria brassicicola AB06486.1 N 0.000
BDBG_04556 Blastomyces dermatitidis BDBG_04556 N 0.000
ACLA_006960 Aspergillus clavatus CADACLAG00000697 N 0.000
AFLA_075060 Aspergillus flavus CADAFLAG00000288 N 0.000
AFUA_7G05260 Aspergillus fumigatus CADAFUAG00009507 N 0.000
An07g02990 Aspergillus niger CADANGAG00005571 N 0.000
ANIA_06676 Aspergillus nidulans CADANIAG00007461 N 0.000
AO090005000269 Aspergillus oryzae CADAORAG00002284 N 0.000
ATEG_06451 Aspergillus terreus CADATEAG00007044 N 0.000
NFIA_026460 Neosartorya fischeri CADNFIAG00002567 N 0.000
CIMG_04697 Coccidioides immitis CIMG_04697 N 0.000
CPSG_07669 Coccidioides posadasii CPSG_07669 N 0.000
EAT92286.2 Phaeosphaeria nodorum EAT92286.2 N 0.000
estExt_Genewise1.C_180314 Trichoderma reesei estExt_Genewise1.C_180314 N 0.000
estExt_Genewise1Plus.C_12199 Neurospora discreta estExt_Genewise1Plus.C_12199 N 0.000
fgenesh1_pg.C_scaffold_28000022 Trichoderma virens fgenesh1_pg.C_scaffold_28000022 N 0.000
fgenesh1_pm.00771_#_149 Aspergillus carbonarius fgenesh1_pm.00771_#_149 N 0.000
FGSG_01904 Fusarium graminearum FGSG_01904 N 0.000
GLRG_01286 Colletotrichum graminicola GLRG_01286 N 0.000
GSTUMT00009853001 Tuber melanosporum GSTUMT00009853001 N 0.000
gw1.13.356.1 Trichoderma atroviride gw1.13.356.1 N 0.000
HCAG_04664 Histoplasma capsulatum HCAG_04664 N 0.000
MCYG_05842 Microsporum canis MCYG_05842 N 0.000
MGG_07511 Magnaporthe oryzae MGG_07511 N 0.000
MGYG_06129 Microsporum gypseum MGYG_06129 N 0.000
NCU04164 Neurospora crassa NCU04164 N 0.000
PABG_06275 Paracoccidioides brasiliensis PABG_06275 N 0.000
Pc12g05910 Penicillium chrysogenum Pc12g05910 N 0.000
PMAA_052310 Penicillium marneffei PMAA_052310 N 0.000
PTRG_07268 Pyrenophora tritici repentis PTRG_07268 N 0.000
scaffold_1-snap.352.1 Neurospora tetrasperma scaffold_1-snap.352.1 N 0.000
SNOG_00791 Stagonospora nodorum SNOG_00791 N 0.000
TEQG_06803 Trichophyton equinum TEQG_06803 N 0.000
TERG_06272 Trichophyton rubrum TERG_06272 N 0.000
TESG_06970 Trichophyton tonsurans TESG_06970 N 0.000
TRV_06236 Trichophyton verrucosum TRV_06236 N 0.000
VDAG_04577 Verticillium dahliae VDAG_04577 N 0.000
VDBG_09339 Verticillium albo atrum VDBG_09339 N 0.000