XP_002200515.1 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000011492 T41961_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000011842 RRM 6 68
ENSTGUP00000011842 RRM 107 172

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.984
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.984
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.884
AAH71160 Xenopus laevis AAH71160 I 0.876
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.860
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.860
AAH44085 Xenopus laevis AAH44085 I 0.860
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.837
srsf5a Danio rerio ENSDARG00000029818 I 0.837
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.829
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.783
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.783
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.767
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.767
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.767
LOC100053264 Equus caballus ENSECAG00000026873 I 0.760
SRSF5 Felis catus ENSFCAG00000008848 I 0.760
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.760
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.760
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.760
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.760
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.760
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.760
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.760
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.760
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.760
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.760
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.760
Srsf5 Mus musculus ENSMUSG00000021134 I 0.760
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.760
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.760
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.760
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.760
SRSF5 Homo sapiens ENSG00000100650 D 0.760
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.760
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.760
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.760
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.760
B52 Drosophila melanogaster FBgn0004587 D 0.760
GF17608 Drosophila ananassae FBgn0094626 I 0.760
GK13948 Drosophila willistoni FBgn0215954 I 0.760
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.760
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.760
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.760
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.760
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
srsf5b Danio rerio ENSDARG00000027734 I 0.752
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
GL23543 Drosophila persimilis FBgn0161133 I 0.752
GI22065 Drosophila mojavensis FBgn0144794 I 0.752
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.752
GH18528 Drosophila grimshawi FBgn0125995 I 0.752
GJ24113 Drosophila virilis FBgn0211197 I 0.752
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.752
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
SRSF4 Homo sapiens ENSG00000116350 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.744
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.744
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.744
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.744
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.744
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.744
ISCW014220 Ixodes scapularis ISCW014220 I 0.744
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.744
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.744
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.744
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.736
ISCW010322 Ixodes scapularis ISCW010322 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.736
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.729
AGAP004592 Anopheles gambiae AGAP004592 I 0.729
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.729
ISCW010321 Ixodes scapularis ISCW010321 I 0.729
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.721
SRSF6 Homo sapiens ENSG00000124193 I 0.721
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.721
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.721
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.721
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.721
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.721
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.721
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.721
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.721
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.713
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.713
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.713
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.713
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.705
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.705
srsf6a Danio rerio ENSDARG00000013729 I 0.705
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.705
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.705
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705
62194 Helobdella robusta 62194 I 0.705
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.705
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705
AAH46668 Xenopus laevis AAH46668 I 0.705