62194 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 62194 T48813_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
62194 RRM 5 67
62194 RRM 112 177

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.760
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.760
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.752
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.744
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.744
Srsf4 Mus musculus ENSMUSG00000028911 I 0.744
SRSF4 Homo sapiens ENSG00000116350 I 0.744
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.744
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.744
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.744
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.744
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.744
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.744
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.744
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.744
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.744
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.744
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.744
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.744
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.736
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.729
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.721
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.721
GK13948 Drosophila willistoni FBgn0215954 I 0.721
B52 Drosophila melanogaster FBgn0004587 D 0.721
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.721
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.721
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.721
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.713
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.713
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.713
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.713
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.713
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.713
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.713
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.713
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.713
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.713
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.713
GI22065 Drosophila mojavensis FBgn0144794 I 0.713
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
LOC100053264 Equus caballus ENSECAG00000026873 I 0.713
GJ24113 Drosophila virilis FBgn0211197 I 0.713
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.713
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.713
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.713
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.713
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.713
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.713
Srsf5 Mus musculus ENSMUSG00000021134 I 0.713
SRSF5 Felis catus ENSFCAG00000008848 I 0.713
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.713
GH18528 Drosophila grimshawi FBgn0125995 I 0.713
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.713
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.713
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.713
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.713
SRSF5 Homo sapiens ENSG00000100650 D 0.713
SRSF6 Homo sapiens ENSG00000124193 I 0.713
GL23543 Drosophila persimilis FBgn0161133 I 0.713
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.705
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.705
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.705
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.705
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.705
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.705
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.705
AGAP004592 Anopheles gambiae AGAP004592 I 0.705
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.705
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.705
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.705
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.705
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.705
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.705
Srsf6 Mus musculus ENSMUSG00000016921 I 0.705
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.705
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.705