estExt_Genewise1Plus.C_sca_890186 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_sca_890186 T51543_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_sca_890186 RRM 5 67
estExt_Genewise1Plus.C_sca_890186 RRM 124 189

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.791
PHUM290500 Pediculus humanus PHUM290500 I 0.783
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.760
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.760
SRSF4 Homo sapiens ENSG00000116350 I 0.760
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.760
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.760
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.760
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.760
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.760
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.760
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.760
Srsf4 Mus musculus ENSMUSG00000028911 I 0.760
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.760
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.760
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.760
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.760
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.760
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.760
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.760
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.760
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.760
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.760
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.752
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.752
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.752
62194 Helobdella robusta 62194 I 0.752
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.752
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.752
B52 Drosophila melanogaster FBgn0004587 D 0.744
GF17608 Drosophila ananassae FBgn0094626 I 0.744
GK13948 Drosophila willistoni FBgn0215954 I 0.744
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.744
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.736
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.736
AAH71160 Xenopus laevis AAH71160 I 0.736
GJ24113 Drosophila virilis FBgn0211197 I 0.736
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.736
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.736
GL23543 Drosophila persimilis FBgn0161133 I 0.736
GI22065 Drosophila mojavensis FBgn0144794 I 0.736
GH18528 Drosophila grimshawi FBgn0125995 I 0.736
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.729
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.729
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.729
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.729
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.729
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.729
AAH44085 Xenopus laevis AAH44085 I 0.729
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.721
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.721
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.721
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.721
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.721
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.721
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.721
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.721
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.721
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.721
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.721
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.721
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.721
Srsf5 Mus musculus ENSMUSG00000021134 I 0.721
SRSF5 Homo sapiens ENSG00000100650 D 0.721
SRSF5 Felis catus ENSFCAG00000008848 I 0.721
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.721
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.721
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.721
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.721
LOC100053264 Equus caballus ENSECAG00000026873 I 0.721
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.721
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.721
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.721
srsf5a Danio rerio ENSDARG00000029818 I 0.721
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.721
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.721
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.721
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.721
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.721
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.721
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.721
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.721
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.721
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.721
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.721
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.713
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.713
ISCW010321 Ixodes scapularis ISCW010321 I 0.713
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.713
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.713
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.713
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.713
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.713
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
srsf5b Danio rerio ENSDARG00000027734 I 0.713
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.713
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.713
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.705
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.705
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.705
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.705
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.705