e_gw.262.30.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.262.30.1 T50172_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.727
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.717
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.262.30.1 RRM 59 128
e_gw.262.30.1 RRM 139 204
e_gw.262.30.1 RRM 234 298

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.729
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.729
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.744
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.724
RBM46 Bos taurus ENSBTAG00000001696 I 0.729
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.734
RBM46 Canis familiaris ENSCAFG00000008473 I 0.729
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.719
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.729
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.702
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.734
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.726
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.734
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.702
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.734
A1CF Cavia porcellus ENSCPOG00000009807 I 0.702
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.714
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.729
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.729
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.716
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.729
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.719
LOC100063743 Equus caballus ENSECAG00000004400 I 0.714
RBM46 Equus caballus ENSECAG00000007649 I 0.734
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.714
RBM47 Echinops telfairi ENSETEG00000009194 I 0.734
RBM46 Echinops telfairi ENSETEG00000014902 I 0.729
RBM46 Felis catus ENSFCAG00000009246 I 0.724
RBM47 Felis catus ENSFCAG00000012399 I 0.729
RBM46 Homo sapiens ENSG00000151962 D 0.729
RBM47 Homo sapiens ENSG00000163694 I 0.729
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.704
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.744
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.729
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.729
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.729
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.729
A1CF Loxodonta africana ENSLAFG00000015462 I 0.702
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.734
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.724
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.744
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.724
A1CF Macaca mulatta ENSMMUG00000007077 I 0.702
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.729
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.729
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.729
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.734
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.718
Rbm46 Mus musculus ENSMUSG00000033882 I 0.729
A1cf Mus musculus ENSMUSG00000052595 I 0.702
Rbm47 Mus musculus ENSMUSG00000070780 I 0.734
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.704
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.700
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.724
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.702
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.729
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.729
RBM47 Oryzias latipes ENSORLG00000005847 I 0.704
A1CF Oryzias latipes ENSORLG00000013342 I 0.716
RBM47 Procavia capensis ENSPCAG00000011879 I 0.729
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.702
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.725
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.729
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.729
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.729
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.729
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.729
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.734
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.729
RBM47 Sorex araneus ENSSARG00000001735 I 0.729
RBM46 Sorex araneus ENSSARG00000006520 I 0.729
RBM47 Sus scrofa ENSSSCG00000008796 I 0.734
RBM46 Sus scrofa ENSSSCG00000008994 I 0.729
A1CF Sus scrofa ENSSSCG00000010431 I 0.702
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.724
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.731
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.744
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.702
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.702
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.707
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.729
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.724
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.729
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.709
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.754
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.812
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.995
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.752
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.752