estExt_fgenesh2_pg.C_sca_1310025 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_sca_1310025 T50909_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_sca_1310025 RRM 10 76
estExt_fgenesh2_pg.C_sca_1310025 RRM 296 366

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.000
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.000
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.000
RBM46 Bos taurus ENSBTAG00000001696 I 0.000
A1CF Bos taurus ENSBTAG00000021195 I 0.000
RBM46 Canis familiaris ENSCAFG00000008473 I 0.000
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.000
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.000
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.000
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.000
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.000
A1CF Cavia porcellus ENSCPOG00000009807 I 0.000
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.000
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.000
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.000
a1cf Danio rerio ENSDARG00000002968 I 0.000
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.000
RBM46 Equus caballus ENSECAG00000007649 I 0.000
A1CF Equus caballus ENSECAG00000010424 I 0.000
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.000
RBM46 Echinops telfairi ENSETEG00000014902 I 0.000
RBM46 Felis catus ENSFCAG00000009246 I 0.000
RBM46 Homo sapiens ENSG00000151962 D 0.000
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.000
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.000
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.000
A1CF Loxodonta africana ENSLAFG00000015462 I 0.000
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.000
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.000
A1CF Macaca mulatta ENSMMUG00000007077 I 0.000
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.000
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.000
Rbm46 Mus musculus ENSMUSG00000033882 I 0.000
A1cf Mus musculus ENSMUSG00000052595 I 0.000
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.000
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.000
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.000
A1CF Oryzias latipes ENSORLG00000013342 I 0.000
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.000
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.000
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.000
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.000
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.000
RBM46 Sorex araneus ENSSARG00000006520 I 0.000
RBM46 Sus scrofa ENSSSCG00000008994 I 0.000
A1CF Sus scrofa ENSSSCG00000010431 I 0.000
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.000
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.000
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.000
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.000
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.000
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.000
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.000
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.000
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.000
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.000
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.000
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.000
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.000