estExt_fgenesh2_pg.C_sca_1310025 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_sca_1310025 T50909_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_sca_1310025 RRM 10 76
estExt_fgenesh2_pg.C_sca_1310025 RRM 296 366

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.800
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.800
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.800
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.800
Smp_041280 Schistosoma mansoni Smp_041280 I 0.800
PHUM315130 Pediculus humanus PHUM315130 I 0.786
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.779
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.779
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.777
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.771
CELF6 Oryzias latipes ENSORLG00000013392 I 0.771
GK17101 Drosophila willistoni FBgn0219100 I 0.764
GM24582 Drosophila sechellia FBgn0179445 I 0.764
GD12651 Drosophila simulans FBgn0184378 I 0.764
GG13757 Drosophila erecta FBgn0106020 I 0.764
GF10965 Drosophila ananassae FBgn0088005 I 0.764
bru-3 Drosophila melanogaster FBgn0262350 D 0.764
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.764
GE20053 Drosophila yakuba FBgn0237378 I 0.764
62054 Helobdella robusta 62054 I 0.764
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.764
GL21647 Drosophila persimilis FBgn0159240 I 0.763
90208 Helobdella robusta 90208 I 0.759
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.757
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.757
GJ13842 Drosophila virilis FBgn0201061 I 0.757
AGAP004950 Anopheles gambiae AGAP004950 I 0.757
GI13095 Drosophila mojavensis FBgn0135852 I 0.757
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.757
AAEL014033 Aedes aegypti AAEL014033 I 0.757
GH14684 Drosophila grimshawi FBgn0122160 I 0.757
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.750
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.750
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.750
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.750
Smp_131780 Schistosoma mansoni Smp_131780 I 0.750
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.750
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.748
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.743
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.743
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.741
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.741
BRUNOL6 Homo sapiens ENSG00000140488 D 0.741
HEXA Macaca mulatta ENSMMUG00000010687 I 0.741
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.741
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.738
LOAG_05508 Loa loa LOAG_05508 I 0.729
Celf6 Mus musculus ENSMUSG00000032297 I 0.729
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.700
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.700