AT3G12130 (Arabidopsis thaliana)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		AT3G12130-TAIR-G T00155_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G12130.1-P CCCH ZF 37 61
AT3G12130.1-P KH 115 177
AT3G12130.1-P CCCH ZF 214 239

Links

Other CCCH ZF,KH family RBPs
Other Arabidopsis thaliana RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000263392 Malus x domestica MDP0000263392 N 0.000
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.000
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.000
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.000
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.000
B9HAC6_POPTR Populus trichocarpa POPTR_0006s20620 N 0.733
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.000
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.000
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.000
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.816
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.807
XM_002873232.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000515 N 0.842
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.939
AT5G06770 Arabidopsis thaliana AT5G06770-TAIR-G N 0.833
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.000