B9GLM3_POPTR (Populus trichocarpa)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		POPTR_0001s05070 T00173_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s05070.1 CCCH ZF 34 59
POPTR_0001s05070.1 KH 106 168
POPTR_0001s05070.1 CCCH ZF 197 222

Links

Other CCCH ZF,KH family RBPs
Other Populus trichocarpa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.965
MDP0000263392 Malus x domestica MDP0000263392 N 0.826
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.817
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.802
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.800
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.800
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.800
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.783
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.776
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.765
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.757
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.730
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.724
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.716
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.707