GRMZM2G124476 (Zea mays)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GRMZM2G124476 T00214_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G124476_P01 CCCH ZF 32 58
GRMZM2G124476_P01 KH 102 164
GRMZM2G124476_P01 CCCH ZF 200 225
GRMZM2G124476_P02 CCCH ZF 38 62
GRMZM2G124476_P02 CCCH ZF 105 131
GRMZM2G124476_P02 KH 175 237
GRMZM2G124476_P02 CCCH ZF 273 298

Links

Other CCCH ZF,KH family RBPs
Other Zea mays RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB06G032000 Sorghum bicolor Sb06g032000 N 0.922
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.915
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.897
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.887
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.831
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.831
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.828
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.823
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.801
ppa009199m Prunus persica ppa009199m N 0.801
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.801
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.797
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.796
SB04G006450 Sorghum bicolor Sb04g006450 N 0.794
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.794
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.794
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.794
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.794
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.794
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.794
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.793
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.793
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.789
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.787
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.782
ppa009316m Prunus persica ppa009316m N 0.780
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.776
27843.m000161 Ricinus communis 27843.m000161 N 0.773
MDP0000217837 Malus x domestica MDP0000217837 N 0.773
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.768
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.766
27843.m000162 Ricinus communis 27843.m000162 N 0.759
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.752
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.746
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.746
MDP0000263392 Malus x domestica MDP0000263392 N 0.741
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.732
mgf003025m Mimulus guttatus mgf003025m N 0.730
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.724
mgf010445m Mimulus guttatus mgf010445m N 0.723
MDP0000202971 Malus x domestica MDP0000202971 N 0.716
MDP0000176924 Malus x domestica MDP0000176924 N 0.716
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.716
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.716
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.713
mgf001428m Mimulus guttatus mgf001428m N 0.711
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.707
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.707
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.702