GRMZM2G071034 (Zea mays)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GRMZM2G071034 T00212_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G071034_P01 CCCH ZF 38 62
GRMZM2G071034_P01 CCCH ZF 106 131
GRMZM2G071034_P01 KH 174 236
GRMZM2G071034_P01 CCCH ZF 274 299
GRMZM2G071034_P02 CCCH ZF 33 58
GRMZM2G071034_P02 KH 101 163
GRMZM2G071034_P02 CCCH ZF 201 226

Links

Other CCCH ZF,KH family RBPs
Other Zea mays RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB06G032000 Sorghum bicolor Sb06g032000 N 0.957
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.915
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.908
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.908
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.852
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.852
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.837
ppa009199m Prunus persica ppa009199m N 0.836
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.831
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.829
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.829
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.829
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.823
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.821
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.821
ppa009316m Prunus persica ppa009316m N 0.821
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.818
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.817
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.817
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.814
SB04G006450 Sorghum bicolor Sb04g006450 N 0.814
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.814
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.810
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.810
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.807
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.807
27843.m000161 Ricinus communis 27843.m000161 N 0.807
MDP0000217837 Malus x domestica MDP0000217837 N 0.807
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.800
27843.m000162 Ricinus communis 27843.m000162 N 0.793
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.789
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.784
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.775
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.775
mgf003025m Mimulus guttatus mgf003025m N 0.771
MDP0000263392 Malus x domestica MDP0000263392 N 0.765
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.764
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.761
mgf010445m Mimulus guttatus mgf010445m N 0.757
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.757
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.757
MDP0000202971 Malus x domestica MDP0000202971 N 0.743
MDP0000176924 Malus x domestica MDP0000176924 N 0.743
mgf001428m Mimulus guttatus mgf001428m N 0.738
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.729
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.725
MDP0000275117 Malus x domestica MDP0000275117 N 0.721
MDP0000130160 Malus x domestica MDP0000130160 N 0.721
MDP0000120315 Malus x domestica MDP0000120315 N 0.721
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.716
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.716
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.709
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.707
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.707