PDK_20s1321721g007 (Phoenix dactylifera)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		PDK_20s1321721g007 T00228_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1321721g007 CCCH ZF 31 56
PDK_20s1321721g007 KH 102 164
PDK_20s1321721g007 CCCH ZF 194 219

Links

Other CCCH ZF,KH family RBPs
Other Phoenix dactylifera RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.861
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.852
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.843
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.836
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.835
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.835
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.828
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.817
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.810
MDP0000263392 Malus x domestica MDP0000263392 N 0.800
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.774
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.767
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.767
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.765
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.765
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.759