B9GYL2_POPTR (Populus trichocarpa)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		POPTR_0003s21780 T00174_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s21780.1 CCCH ZF 29 54
POPTR_0003s21780.1 KH 117 179
POPTR_0003s21780.1 CCCH ZF 208 233

Links

Other CCCH ZF,KH family RBPs
Other Populus trichocarpa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.965
MDP0000263392 Malus x domestica MDP0000263392 N 0.843
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.817
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.800
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.784
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.783
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.783
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.774
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.774
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.767
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.757
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.748
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.724
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.716
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.716