CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UNKL
(
Tursiops truncatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTTRG00000011985
T03592_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000011367
CCCH ZF
186
203
ARGHCVKNGLHCAFAHGP
ENSTTRP00000011367
CCCH ZF
446
472
YKSTKCNDMLQTGHCPRGPFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Tursiops truncatus
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_37725
Brugia malayi
Bm1_37725
N
0.000
RGD1565247
Rattus norvegicus
ENSRNOG00000017598
N
0.933
UNK
Tupaia belangeri
ENSTBEG00000016178
N
0.000
UNKL
Takifugu rubripes
ENSTRUG00000012086
N
0.911
UNK
Vicugna pacos
ENSVPAG00000011532
N
0.000
unkl
Xenopus tropicalis
ENSXETG00000021599
N
0.000
GK12832
Drosophila willistoni
FBgn0214841
N
0.000
Aqu1.225680
Amphimedon queenslandica
Aqu1.225680
N
0.000
e_gw.10.245.1
Nematostella vectensis
e_gw.10.245.1
N
0.000
fgenesh2_pg.scaffold_5000153
Branchiostoma floridae
fgenesh2_pg.scaffold_5000153
N
0.000
Sjc_0008870
Schistosoma japonicum
Sjc_0008870
N
0.000
Smp_154250
Schistosoma mansoni
Smp_154250
N
0.000
XP_001180099.1
Strongylocentrotus purpuratus
XP_001180099.1
N
0.000
XP_002155288.1
Hydra magnipapillata
XP_002155288.1
N
0.000
XP_789013.2
Strongylocentrotus purpuratus
XP_789013.2
N
0.000
UNK
Oryzias latipes
ENSORLG00000018637
N
0.000
UNK
Otolemur garnettii
ENSOGAG00000001922
N
0.000
UNKL
Otolemur garnettii
ENSOGAG00000001437
N
0.000
LOAG_04272
Loa loa
LOAG_04272
N
0.000
WUBG_00870
Wuchereria bancrofti
WUBG_00870
N
0.000
amel4_ncbi_hmm89035
Apis mellifera
amel4_ncbi_hmm89035
N
0.778
DGIL_AUG5s17350g1t1
Acyrtosiphon pisum
DGIL_AUG5s17350g1t1
N
0.000
nasonia_NCBI_hmm1068274
Nasonia vitripennis
nasonia_NCBI_hmm1068274
N
0.000
AAEL014545
Aedes aegypti
AAEL014545
N
0.000
ENSCSAVG00000004843
Ciona savignyi
ENSCSAVG00000004843
N
0.000
UNK
Erinaceus europaeus
ENSEEUG00000013779
N
0.000
UNK
Echinops telfairi
ENSETEG00000019640
N
0.822
UNKL
Homo sapiens
ENSG00000059145
N
0.956
UNKL
Gorilla gorilla
ENSGGOG00000014915
N
0.956
UNK
Microcebus murinus
ENSMICG00000007591
N
0.000
ENSMMUG00000006693
Macaca mulatta
ENSMMUG00000006693
N
0.000
Unkl
Mus musculus
ENSMUSG00000015127
N
0.000
ENSOANG00000021809
Ornithorhynchus anatinus
ENSOANG00000021809
N
0.000
AAH72265
Xenopus laevis
AAH72265
N
0.000