B9HNW7_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0009s05810 T04048_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05810.1 CCCH ZF 290 311

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa025636m Prunus persica ppa025636m N 0.773
mgf012825m Mimulus guttatus mgf012825m N 0.739
mgf009145m Mimulus guttatus mgf009145m N 0.000
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.000
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.000
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.000
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.000
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.000
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.739
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.000
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.000
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.000
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.000
GRMZM2G027298 Zea mays GRMZM2G027298 N 0.000
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.000
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.000
ppa002415m Prunus persica ppa002415m N 0.000
ppa002251m Prunus persica ppa002251m N 0.000
MDP0000911962 Malus x domestica MDP0000911962 N 0.818
MDP0000699611 Malus x domestica MDP0000699611 N 0.739
MDP0000678327 Malus x domestica MDP0000678327 N 0.000
MDP0000673185 Malus x domestica MDP0000673185 N 0.739
MDP0000588193 Malus x domestica MDP0000588193 N 0.000
MDP0000320891 Malus x domestica MDP0000320891 N 0.739
MDP0000200915 Malus x domestica MDP0000200915 N 0.818
MDP0000196475 Malus x domestica MDP0000196475 N 0.739
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.000
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.000
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.000
29681.m001358 Ricinus communis 29681.m001358 N 0.000
BRADI4G06290 Brachypodium distachyon BRADI4G06290 N 0.000
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.000
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.000
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.739
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.000
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.000
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.000
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.000
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.739
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.000
PK25575.1 Cannabis sativa PK25575.1 N 0.000
PK15838.1 Cannabis sativa PK15838.1 N 0.000
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.000
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.000
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.000
SB09G002390 Sorghum bicolor Sb09g002390 N 0.000
SB08G016640 Sorghum bicolor Sb08g016640 N 0.000
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.000
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.000
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.000
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.000
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.000
LOC_Os12g33090 Oryza sativa LOC_Os12g33090 N 0.000
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.000
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.000
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.000
PK05226.1 Cannabis sativa PK05226.1 N 0.000