PCBP3 (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000008872 T19607_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.789
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.711
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.705
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.700
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000000897 KH 17 79
ENSTNIP00000000897 KH 103 135
ENSTNIP00000000897 KH 247 309
ENSTNIP00000003311 KH 17 79
ENSTNIP00000003311 KH 103 134
ENSTNIP00000003311 KH 259 321
ENSTNIP00000003568 KH 17 79
ENSTNIP00000003568 KH 103 133
ENSTNIP00000003568 KH 262 324
ENSTNIP00000011725 KH 17 79
ENSTNIP00000011725 KH 103 135
ENSTNIP00000011725 KH 270 332

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP1 Homo sapiens ENSG00000169564 D 0.700
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.789
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.700
PCBP2 Homo sapiens ENSG00000197111 D 0.711
pcbp2 Danio rerio ENSDARG00000013184 D 0.705
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.711
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.700
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.711
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.700
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.789
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.711
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.759
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.711
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.741
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.711
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.700
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.789
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.711
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.711
CAD29864 Xenopus laevis CAD29864 I 0.705
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.711
CAB50743 Xenopus laevis CAB50743 I 0.705
AAH84195 Xenopus laevis AAH84195 I 0.705
AAH41241 Xenopus laevis AAH41241 I 0.705
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.700
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.700
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.705
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.711
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.789
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.795
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.805
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.795
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.753
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.711
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.700
ENSRNOG00000012044 Rattus norvegicus ENSRNOG00000012044 I 0.752
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.789
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.711
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.789
LOC100050579 Equus caballus ENSECAG00000002544 I 0.700
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.711
pcbp3 Danio rerio ENSDARG00000054378 I 0.711
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.700
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.789
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.711
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.705
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.700
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.718
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.789
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.711
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.779
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.711
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.700
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.747
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.789
LOC100050101 Equus caballus ENSECAG00000012413 I 0.789
PCBP2 Equus caballus ENSECAG00000022389 I 0.711
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.700
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.711
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.705
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.789
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.742
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.835
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.700
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.711
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.700
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.711
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.789
PCBP3 Gallus gallus ENSGALG00000013155 I 0.753
PCBP3 Gallus gallus ENSGALG00000004394 I 0.747
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.795
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.795
PCBP3 Homo sapiens ENSG00000183570 I 0.789
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.711