pcbp3 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000012658 T19762_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.984
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.963
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.926
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.926
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.878
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000025069 KH 15 75
ENSXETP00000025069 KH 99 162
ENSXETP00000025069 KH 277 339
ENSXETP00000027708 KH 15 75
ENSXETP00000027708 KH 99 162
ENSXETP00000027708 KH 243 305

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH41241 Xenopus laevis AAH41241 I 1.000
CAB50743 Xenopus laevis CAB50743 I 1.000
CAD29864 Xenopus laevis CAD29864 I 1.000
AAH84195 Xenopus laevis AAH84195 I 1.000
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.984
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.984
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.984
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.984
PCBP2 Equus caballus ENSECAG00000022389 I 0.984
PCBP2 Homo sapiens ENSG00000197111 D 0.984
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.984
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.984
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.984
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.984
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.984
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.984
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.984
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.984
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.984
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.984
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.984
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.984
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.984
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.984
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.984
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.979
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.973
pcbp2 Danio rerio ENSDARG00000013184 D 0.963
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.957
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.957
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.952
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.952
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.947
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.936
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.936
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.936
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.926
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.926
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.926
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.926
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.926
PCBP1 Homo sapiens ENSG00000169564 D 0.926
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.926
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.926
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.926
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.926
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.926
LOC100050579 Equus caballus ENSECAG00000002544 I 0.926
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.915
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.910
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.904
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.899
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.894
PCBP3 Gallus gallus ENSGALG00000013155 I 0.894
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.894
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.888
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.888
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.883
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.878
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.878
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.878
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.878
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.878
LOC100050101 Equus caballus ENSECAG00000012413 I 0.878
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.878
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.878
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.878
PCBP3 Homo sapiens ENSG00000183570 I 0.878
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.878
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.878
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.878
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.873
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.867
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.867
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.867
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.867
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.867
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.867
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.862
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.857
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.846
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.840
PCBP3 Gallus gallus ENSGALG00000004394 I 0.840
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.836
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.835
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.827
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.803
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.798
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.798
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.798
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.792
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.787
pcbp3 Danio rerio ENSDARG00000054378 I 0.782
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.782
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.777
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.767
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.763
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.762
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.751
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.751
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.746
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.746
PCBP3 Felis catus ENSFCAG00000014812 I 0.745
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.745
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.742
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.738
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.732
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.729
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.726
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.725
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.725
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.721
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.721
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.721
PCBP4 Homo sapiens ENSG00000090097 I 0.721
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.721
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.721
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.721
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.721
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.721
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.721
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.721
LOC100060660 Equus caballus ENSECAG00000024218 I 0.721
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.716
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.711
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.705
PCBP1 Microcebus murinus ENSMICG00000002140 I 0.704