PCBP3 (Oryzias latipes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSORLG00000000059 T19272_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.931
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.841
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.836
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.815
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.815
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000000068 KH 17 71
ENSORLP00000000068 KH 94 157
ENSORLP00000000068 KH 279 341

Links

Other KH family RBPs
Other Oryzias latipes RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.958
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.952
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.952
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.947
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.937
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.931
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.931
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.931
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.931
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.931
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.931
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.931
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.931
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.931
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.931
PCBP3 Homo sapiens ENSG00000183570 I 0.931
LOC100050101 Equus caballus ENSECAG00000012413 I 0.931
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.931
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.921
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.894
PCBP3 Gallus gallus ENSGALG00000004394 I 0.894
PCBP3 Gallus gallus ENSGALG00000013155 I 0.894
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.889
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.884
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.880
pcbp3 Danio rerio ENSDARG00000054378 I 0.857
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.847
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.841
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.841
PCBP2 Homo sapiens ENSG00000197111 D 0.841
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.841
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.841
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.841
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.841
PCBP2 Equus caballus ENSECAG00000022389 I 0.841
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.841
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.841
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.841
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.841
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.841
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.841
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.841
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.841
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.841
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.841
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.841
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.841
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.841
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.841
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.841
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.836
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.836
pcbp2 Danio rerio ENSDARG00000013184 D 0.836
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.836
AAH41241 Xenopus laevis AAH41241 I 0.836
AAH84195 Xenopus laevis AAH84195 I 0.836
CAB50743 Xenopus laevis CAB50743 I 0.836
CAD29864 Xenopus laevis CAD29864 I 0.836
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.831
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.831
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.820
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.820
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.820
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.815
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.815
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.815
PCBP1 Homo sapiens ENSG00000169564 D 0.815
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.815
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.815
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.815
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.815
LOC100050579 Equus caballus ENSECAG00000002544 I 0.815
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.815
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.815
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.815
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.815
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.815
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.815
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.810
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.804
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.799
PCBP3 Felis catus ENSFCAG00000014812 I 0.794
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.794
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.794
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.788
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.788
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.783
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.769
PCBP3 Procavia capensis ENSPCAG00000001454 I 0.769
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.767
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.761
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.759
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.757
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.751
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.746
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.743
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.742
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.742
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.741
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.737
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.737
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.737
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.732
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.728
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.728
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.717
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.716
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.712
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.711
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.709
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.707
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.707
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.707
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.707
PCBP4 Homo sapiens ENSG00000090097 I 0.707
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.707
LOC100060660 Equus caballus ENSECAG00000024218 I 0.707
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.707
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.707
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.707
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.707
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.707
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.700