PUM1 (Tursiops truncatus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSTTRG00000007436 T24293_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.974
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.974
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.897
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.897
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.897
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.897
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.897
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.770
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.770
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.770
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.770
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.770
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.770
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000007038 PUF 883 917
ENSTTRP00000007038 PUF 919 951
ENSTTRP00000007038 PUF 955 985
ENSTTRP00000007038 PUF 993 1027
ENSTTRP00000007038 PUF 1029 1063
ENSTTRP00000007038 PUF 1065 1099
ENSTTRP00000007038 PUF 1101 1131
ENSTTRP00000007038 PUF 1147 1178

Links

Other PUF family RBPs
Other Tursiops truncatus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q7ZXB5 Xenopus laevis Q7ZXB5 N 0.000
RBM22 Taeniopygia guttata ENSTGUG00000000850 N 0.000
Rbm22 Rattus norvegicus ENSRNOG00000019235 N 0.000
RBM22 Pteropus vampyrus ENSPVAG00000014231 N 0.000
RBM22 Pan troglodytes ENSPTRG00000017423 N 0.000
ENSPPYG00000015955 Pongo pygmaeus ENSPPYG00000015955 N 0.000
RBM22 Procavia capensis ENSPCAG00000015091 N 0.000
RBM22 Oryzias latipes ENSORLG00000004975 N 0.000
ENSOPRG00000008481 Ochotona princeps ENSOPRG00000008481 N 0.000
RBM22 Oryctolagus cuniculus ENSOCUG00000011532 N 0.000
RBM22 Ornithorhynchus anatinus ENSOANG00000002314 N 0.000
RBM22 Takifugu rubripes ENSTRUG00000004724 N 0.000
RBM22 Tursiops truncatus ENSTTRG00000012778 N 0.000
AAH45067 Xenopus laevis AAH45067 N 0.000
gw.38.22.1 Branchiostoma floridae gw.38.22.1 N 0.000
gw.351.5.1 Nematostella vectensis gw.351.5.1 N 0.000
estExt_fgenesh2_pm.C_1790010 Branchiostoma floridae estExt_fgenesh2_pm.C_1790010 N 0.000
e_gw1.462.21.1 Capitella teleta e_gw1.462.21.1 N 0.000
e_gw1.11.24.1 Lottia gigantea e_gw1.11.24.1 N 0.000
PHUM268310 Pediculus humanus PHUM268310 N 0.000
ISCW021094 Ixodes scapularis ISCW021094 N 0.000
rbm22 Xenopus tropicalis ENSXETG00000020435 N 0.000
RBM22 Vicugna pacos ENSVPAG00000002066 N 0.000
RBM22 Monodelphis domestica ENSMODG00000009574 N 0.000
ENSMODG00000006398 Monodelphis domestica ENSMODG00000006398 N 0.000
RBM22 Danio rerio ENSDARG00000010238 N 0.000
RBM22 Cavia porcellus ENSCPOG00000001946 N 0.000
RBM22 Callithrix jacchus ENSCJAG00000020963 N 0.000
ENSCHOG00000013522 Choloepus hoffmanni ENSCHOG00000013522 N 0.000
ENSCHOG00000004192 Choloepus hoffmanni ENSCHOG00000004192 N 0.000
ENSCHOG00000001041 Choloepus hoffmanni ENSCHOG00000001041 N 0.000
RBM22 Canis familiaris ENSCAFG00000018082 N 0.000
RBM22_BOVIN Bos taurus ENSBTAG00000035397 N 0.000
RBM22_BOVIN Bos taurus ENSBTAG00000030366 N 0.000
RBM22 Anolis carolinensis ENSACAG00000014750 N 0.000
RBM22 Dasypus novemcinctus ENSDNOG00000011166 N 0.000
Rbm22 Dipodomys ordii ENSDORG00000005329 N 0.000
RBM22 Macaca mulatta ENSMMUG00000020683 N 0.000
ENSMLUG00000003461 Myotis lucifugus ENSMLUG00000003461 N 0.000
RBM22 Meleagris gallopavo ENSMGAG00000006298 N 0.000
ENSMEUG00000009348 Macropus eugenii ENSMEUG00000009348 N 0.000
RBM22 Loxodonta africana ENSLAFG00000006638 N 0.000
RBM22 Gorilla gorilla ENSGGOG00000012947 N 0.000
RBM22_CHICK Gallus gallus ENSGALG00000004555 N 0.000
RBM22 Gasterosteus aculeatus ENSGACG00000018027 N 0.000
RBM22 Homo sapiens ENSG00000086589 N 0.000
ENSEEUG00000005638 Erinaceus europaeus ENSEEUG00000005638 N 0.000
amel4_ncbi_hmm34588 Apis mellifera amel4_ncbi_hmm34588 N 0.000