CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Bm1_37765
(
Brugia malayi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Bm1_37765
T28396_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.732
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.710
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.710
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.710
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.710
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.710
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.710
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.710
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.710
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bm1_37765
RRM
19
90
IYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISSATNALRAMQGFPFYDKPMR
Bm1_37765
RRM
161
225
LFCTNLPEETTEQMLSLLFNPYPGLKDIRRIPNRPDIAFVEFETEAEATSARSGLNNFKITPSQS
Links
Other
RRM
family RBPs
Other
Brugia malayi
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
snf
Drosophila melanogaster
FBgn0003449
D
0.732
SNRPA
Homo sapiens
ENSG00000077312
D
0.710
CAA41021
Xenopus laevis
CAA41021
I
0.725
GL14287
Drosophila persimilis
FBgn0151892
I
0.732
GH24608
Drosophila grimshawi
FBgn0132064
I
0.739
GG18748
Drosophila erecta
FBgn0110957
I
0.732
GF21334
Drosophila ananassae
FBgn0098336
I
0.732
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.732
snf
Drosophila mojavensis
FBgn0069598
I
0.739
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.710
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.710
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.710
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.710
GM12396
Drosophila sechellia
FBgn0167333
I
0.732
GJ16850
Drosophila virilis
FBgn0204029
I
0.739
GK25839
Drosophila willistoni
FBgn0227798
I
0.739
AAH44979
Xenopus laevis
AAH44979
I
0.725
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.710
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.732
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.745
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.737
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.737
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.737
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.746
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.737
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.708
P45429
Xenopus laevis
P45429
I
0.725
GE16390
Drosophila yakuba
FBgn0233919
I
0.732
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.710
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.710
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.717
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.710
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.710
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.732
AGAP011637
Anopheles gambiae
AGAP011637
I
0.732
AAEL014167
Aedes aegypti
AAEL014167
I
0.739
AAEL002980
Aedes aegypti
AAEL002980
I
0.739
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.734
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.710
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.719
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.993
LOAG_02293
Loa loa
LOAG_02293
I
0.993
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.732
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.717
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.703
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.710
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.708
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.710
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.710
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.717
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.710
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.710
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.710
SNRPA
Felis catus
ENSFCAG00000016209
I
0.710
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.703
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.710
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.710
snrpa
Danio rerio
ENSDARG00000018890
I
0.710
Minc06447
Meloidogyne incognita
Minc06447
N
0.739
Minc08423
Meloidogyne incognita
Minc08423
N
0.739
Ppa-rnp-2
Pristionchus pacificus
PPA13583
N
0.750