CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPA_estExt_Genewise1Plus.C_890021
(
Daphnia pulex
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPA_estExt_Genewise1Plus.C_890021
T53975_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.877
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.841
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.841
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.841
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.841
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.841
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.841
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.841
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.841
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPA_estExt_Genewise1Plus.C_890021
RRM
9
80
IYINNLNEKVKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEVTSATNALRGMQGFPFYDKPMR
SPA_estExt_Genewise1Plus.C_890021
RRM
155
219
LFLTNLPEETNEMMLSMLFTQFPGFKEVRLVPGRHDIAFVEFENEVQSAGARESLQGFKITPTHS
Links
Other
RRM
family RBPs
Other
Daphnia pulex
RBPs
123 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.891
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.891
AAEL002980
Aedes aegypti
AAEL002980
I
0.884
AAEL014167
Aedes aegypti
AAEL014167
I
0.884
GH24608
Drosophila grimshawi
FBgn0132064
I
0.884
GK25839
Drosophila willistoni
FBgn0227798
I
0.884
GJ16850
Drosophila virilis
FBgn0204029
I
0.884
snf
Drosophila mojavensis
FBgn0069598
I
0.884
GL14287
Drosophila persimilis
FBgn0151892
I
0.877
GM12396
Drosophila sechellia
FBgn0167333
I
0.877
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.877
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.877
snf
Drosophila melanogaster
FBgn0003449
D
0.877
GF21334
Drosophila ananassae
FBgn0098336
I
0.877
GE16390
Drosophila yakuba
FBgn0233919
I
0.877
GG18748
Drosophila erecta
FBgn0110957
I
0.877
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.871
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.870
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.870
AGAP011637
Anopheles gambiae
AGAP011637
I
0.862
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.862
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.856
P45429
Xenopus laevis
P45429
I
0.855
AAH44979
Xenopus laevis
AAH44979
I
0.855
CAA41021
Xenopus laevis
CAA41021
I
0.855
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.854
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.854
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.841
SNRPA
Felis catus
ENSFCAG00000016209
I
0.841
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.841
SNRPA
Homo sapiens
ENSG00000077312
D
0.841
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.841
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.841
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.841
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.841
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.841
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.841
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.841
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.841
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.841
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.841
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.841
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.841
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.841
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.841
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.841
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.841
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.841
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.841
snrpa
Danio rerio
ENSDARG00000018890
I
0.833
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.833
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.833
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.833
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.832
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.832
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.826
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.826
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.826
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.826
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.825
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.806
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.806
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.806
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.806
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.804
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.799
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.799
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.799
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.799
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.799
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.799
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.799
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.799
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.799
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.799
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.799
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.799
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.799
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.799
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.799
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.799
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.799
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.799
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.799
SNRPB2
Homo sapiens
ENSG00000125870
I
0.799
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.799
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.799
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.799
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.799
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.799
AAH72799
Xenopus laevis
AAH72799
I
0.799
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.799
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.796
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.796
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.791
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.791
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.791
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.790
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.790
105398
Helobdella robusta
105398
I
0.788
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.788
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.788
AAH84107
Xenopus laevis
AAH84107
I
0.783
snrpb2
Danio rerio
ENSDARG00000039424
I
0.781
Aqu1.229782
Amphimedon queenslandica
Aqu1.229782
I
0.777
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.777
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.774
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.763
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.761
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.754
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.752
LOAG_02293
Loa loa
LOAG_02293
I
0.745
Bm1_37765
Brugia malayi
Bm1_37765
I
0.745
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.745
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.739
186191
Helobdella robusta
186191
I
0.737
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.734
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.734
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.732
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.732
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.712
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.703
SNRPA
Microcebus murinus
ENSMICG00000009766
I
0.703