e_gw1.1.761.1 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.1.761.1 T49819_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.783
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.775
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.775
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.775
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.775
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.775
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.775
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.775
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.1.761.1 RRM 11 82
e_gw1.1.761.1 RRM 132 196

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.832
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.825
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.825
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.818
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.810
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.804
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.804
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.797
GL14287 Drosophila persimilis FBgn0151892 I 0.797
GF21334 Drosophila ananassae FBgn0098336 I 0.797
SNRPA Oryzias latipes ENSORLG00000006536 I 0.796
GH24608 Drosophila grimshawi FBgn0132064 I 0.790
snf Drosophila mojavensis FBgn0069598 I 0.790
AAEL002980 Aedes aegypti AAEL002980 I 0.790
AAEL014167 Aedes aegypti AAEL014167 I 0.790
GK25839 Drosophila willistoni FBgn0227798 I 0.790
GJ16850 Drosophila virilis FBgn0204029 I 0.790
AAH44979 Xenopus laevis AAH44979 I 0.783
GG18748 Drosophila erecta FBgn0110957 I 0.783
snf Drosophila melanogaster FBgn0003449 D 0.783
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.783
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.783
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.783
GE16390 Drosophila yakuba FBgn0233919 I 0.783
GM12396 Drosophila sechellia FBgn0167333 I 0.783
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.783
P45429 Xenopus laevis P45429 I 0.783
CAA41021 Xenopus laevis CAA41021 I 0.783
AGAP011637 Anopheles gambiae AGAP011637 I 0.783
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.775
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.775
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.775
SNRPA Homo sapiens ENSG00000077312 D 0.775
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.775
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.775
SNRPA Sus scrofa ENSSSCG00000002998 I 0.775
SNRPA Felis catus ENSFCAG00000016209 I 0.775
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.775
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.775
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.775
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.775
SNRPA Procavia capensis ENSPCAG00000012325 I 0.775
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.775
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.775
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.775
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.775
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.775
LOC100068274 Equus caballus ENSECAG00000013141 I 0.775
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.775
SNRPA Canis familiaris ENSCAFG00000005091 I 0.775
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.770
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.768
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.768
snrpa Danio rerio ENSDARG00000018890 I 0.768
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.763
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.761
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.761
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.761
Snrpa Mus musculus ENSMUSG00000061479 I 0.761
105398 Helobdella robusta 105398 I 0.759
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.754
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.752
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.752
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.741
AAH72799 Xenopus laevis AAH72799 I 0.741
Bm1_37765 Brugia malayi Bm1_37765 I 0.737
LOAG_02293 Loa loa LOAG_02293 I 0.737
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.737
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.734
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.734
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.734
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.734
SNRPA Echinops telfairi ENSETEG00000019205 I 0.732
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.730
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.730
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.727
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.727
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.727
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.727
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.727
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.727
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.727
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.727
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.727
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.727
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.727
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.727
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.727
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.727
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.727
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.727
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.727
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.727
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.727
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.727
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.727
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.727
LOC100050830 Equus caballus ENSECAG00000018407 I 0.727
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.727
SNRPB2 Homo sapiens ENSG00000125870 I 0.727
AAH84107 Xenopus laevis AAH84107 I 0.725
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.725
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.723
snrpb2 Danio rerio ENSDARG00000039424 I 0.723
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.723
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.719
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.719
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.719
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.715
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.710
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.705
186191 Helobdella robusta 186191 I 0.701