CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ019134
(
Culex pipiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CpipJ_CPIJ019134
T29027_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.935
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.833
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.833
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.833
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.833
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.833
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.833
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.833
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.833
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ019134-RA
RRM
9
80
VYINNLNEKIKKEELKKSLYAIFSQFGQIMDIVALKTLKMRGQAFIIFKEIGSATNAMRTMQGFPFYDKPMR
CpipJ_CPIJ019134-RA
RRM
144
209
LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAM
Links
Other
RRM
family RBPs
Other
Culex pipiens
RBPs
122 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
1.000
AAEL002980
Aedes aegypti
AAEL002980
I
0.978
AAEL014167
Aedes aegypti
AAEL014167
I
0.978
AGAP011637
Anopheles gambiae
AGAP011637
I
0.957
GJ16850
Drosophila virilis
FBgn0204029
I
0.942
snf
Drosophila mojavensis
FBgn0069598
I
0.942
GH24608
Drosophila grimshawi
FBgn0132064
I
0.942
GK25839
Drosophila willistoni
FBgn0227798
I
0.942
GL14287
Drosophila persimilis
FBgn0151892
I
0.935
snf
Drosophila melanogaster
FBgn0003449
D
0.935
GF21334
Drosophila ananassae
FBgn0098336
I
0.935
GE16390
Drosophila yakuba
FBgn0233919
I
0.935
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.935
GG18748
Drosophila erecta
FBgn0110957
I
0.935
GM12396
Drosophila sechellia
FBgn0167333
I
0.935
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.891
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.891
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.891
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.885
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.871
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.870
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.870
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.848
snrpa
Danio rerio
ENSDARG00000018890
I
0.841
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.841
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.833
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.833
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.833
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.833
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.833
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.833
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.833
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.833
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.833
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.833
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.833
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.833
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.833
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.833
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.833
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.833
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.833
SNRPA
Homo sapiens
ENSG00000077312
D
0.833
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.833
SNRPA
Felis catus
ENSFCAG00000016209
I
0.833
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.833
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.826
P45429
Xenopus laevis
P45429
I
0.826
CAA41021
Xenopus laevis
CAA41021
I
0.826
AAH44979
Xenopus laevis
AAH44979
I
0.826
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.826
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.820
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.820
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.820
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.819
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.819
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.819
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.819
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.819
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.819
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.819
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.813
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.813
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.813
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.813
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.813
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.813
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.813
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.813
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.813
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.813
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.813
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.813
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.813
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.813
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.813
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.813
SNRPB2
Homo sapiens
ENSG00000125870
I
0.813
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.813
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.813
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.813
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.813
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.813
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.813
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.813
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.813
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.813
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.806
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.806
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.806
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.806
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.804
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.804
AAH72799
Xenopus laevis
AAH72799
I
0.799
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.791
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.790
AAH84107
Xenopus laevis
AAH84107
I
0.790
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.783
snrpb2
Danio rerio
ENSDARG00000039424
I
0.783
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.783
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.783
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.777
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.775
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.768
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.768
186191
Helobdella robusta
186191
I
0.768
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.761
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.754
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.746
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.746
105398
Helobdella robusta
105398
I
0.746
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.746
Aqu1.229782
Amphimedon queenslandica
Aqu1.229782
I
0.741
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.739
LOAG_02293
Loa loa
LOAG_02293
I
0.732
Bm1_37765
Brugia malayi
Bm1_37765
I
0.732
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.732
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.727
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.719
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.719
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.717
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.717