CpipJ_CPIJ019134 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ019134 T29027_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.935
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.833
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.833
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.833
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.833
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.833
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.833
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.833
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ019134-RA RRM 9 80
CpipJ_CPIJ019134-RA RRM 144 209

Links

Other RRM family RBPs
Other Culex pipiens RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 1.000
AAEL002980 Aedes aegypti AAEL002980 I 0.978
AAEL014167 Aedes aegypti AAEL014167 I 0.978
AGAP011637 Anopheles gambiae AGAP011637 I 0.957
GJ16850 Drosophila virilis FBgn0204029 I 0.942
snf Drosophila mojavensis FBgn0069598 I 0.942
GH24608 Drosophila grimshawi FBgn0132064 I 0.942
GK25839 Drosophila willistoni FBgn0227798 I 0.942
GL14287 Drosophila persimilis FBgn0151892 I 0.935
snf Drosophila melanogaster FBgn0003449 D 0.935
GF21334 Drosophila ananassae FBgn0098336 I 0.935
GE16390 Drosophila yakuba FBgn0233919 I 0.935
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.935
GG18748 Drosophila erecta FBgn0110957 I 0.935
GM12396 Drosophila sechellia FBgn0167333 I 0.935
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.891
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.891
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.891
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.885
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.871
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.870
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.870
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.848
snrpa Danio rerio ENSDARG00000018890 I 0.841
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.841
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.833
SNRPA Oryzias latipes ENSORLG00000006536 I 0.833
SNRPA Sus scrofa ENSSSCG00000002998 I 0.833
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.833
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.833
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.833
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.833
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.833
SNRPA Procavia capensis ENSPCAG00000012325 I 0.833
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.833
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.833
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.833
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.833
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.833
LOC100068274 Equus caballus ENSECAG00000013141 I 0.833
SNRPA Canis familiaris ENSCAFG00000005091 I 0.833
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.833
SNRPA Homo sapiens ENSG00000077312 D 0.833
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.833
SNRPA Felis catus ENSFCAG00000016209 I 0.833
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.833
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.826
P45429 Xenopus laevis P45429 I 0.826
CAA41021 Xenopus laevis CAA41021 I 0.826
AAH44979 Xenopus laevis AAH44979 I 0.826
Snrpa Mus musculus ENSMUSG00000061479 I 0.826
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.820
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.820
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.820
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.819
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.819
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.819
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.819
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.819
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.819
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.819
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.813
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.813
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.813
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.813
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.813
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.813
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.813
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.813
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.813
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.813
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.813
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.813
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.813
LOC100050830 Equus caballus ENSECAG00000018407 I 0.813
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.813
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.813
SNRPB2 Homo sapiens ENSG00000125870 I 0.813
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.813
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.813
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.813
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.813
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.813
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.813
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.813
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.813
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.813
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.806
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.806
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.806
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.806
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.804
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.804
AAH72799 Xenopus laevis AAH72799 I 0.799
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.791
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.790
AAH84107 Xenopus laevis AAH84107 I 0.790
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.783
snrpb2 Danio rerio ENSDARG00000039424 I 0.783
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.783
SNRPA Echinops telfairi ENSETEG00000019205 I 0.783
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.777
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.775
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.768
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.768
186191 Helobdella robusta 186191 I 0.768
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.761
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.754
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.746
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.746
105398 Helobdella robusta 105398 I 0.746
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.746
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.741
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.739
LOAG_02293 Loa loa LOAG_02293 I 0.732
Bm1_37765 Brugia malayi Bm1_37765 I 0.732
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.732
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.727
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.719
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.719
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.717
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.717