AAEL002980 (Aedes aegypti)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAEL002980 T32322_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.942
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.848
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.848
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.848
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.848
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.848
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.848
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.848
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.848
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAEL002980-PA RRM 9 80
AAEL002980-PA RRM 144 209

Links

Other RRM family RBPs
Other Aedes aegypti RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL014167 Aedes aegypti AAEL014167 I 1.000
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.978
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.978
AGAP011637 Anopheles gambiae AGAP011637 I 0.971
GH24608 Drosophila grimshawi FBgn0132064 I 0.949
GK25839 Drosophila willistoni FBgn0227798 I 0.949
GJ16850 Drosophila virilis FBgn0204029 I 0.949
snf Drosophila mojavensis FBgn0069598 I 0.949
GM12396 Drosophila sechellia FBgn0167333 I 0.942
GE16390 Drosophila yakuba FBgn0233919 I 0.942
GL14287 Drosophila persimilis FBgn0151892 I 0.942
GF21334 Drosophila ananassae FBgn0098336 I 0.942
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.942
GG18748 Drosophila erecta FBgn0110957 I 0.942
snf Drosophila melanogaster FBgn0003449 D 0.942
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.906
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.906
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.892
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.891
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.891
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.884
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.884
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.855
snrpa Danio rerio ENSDARG00000018890 I 0.855
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.855
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.848
SNRPA Oryzias latipes ENSORLG00000006536 I 0.848
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.848
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.848
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.848
SNRPA Procavia capensis ENSPCAG00000012325 I 0.848
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.848
SNRPA Sus scrofa ENSSSCG00000002998 I 0.848
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.848
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.848
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.848
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.848
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.848
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.848
SNRPA Canis familiaris ENSCAFG00000005091 I 0.848
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.848
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.848
LOC100068274 Equus caballus ENSECAG00000013141 I 0.848
SNRPA Felis catus ENSFCAG00000016209 I 0.848
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.848
SNRPA Homo sapiens ENSG00000077312 D 0.848
Snrpa Mus musculus ENSMUSG00000061479 I 0.841
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.841
AAH44979 Xenopus laevis AAH44979 I 0.841
P45429 Xenopus laevis P45429 I 0.841
CAA41021 Xenopus laevis CAA41021 I 0.841
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.833
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.833
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.833
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.833
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.833
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.833
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.826
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.820
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.820
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.820
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.819
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.819
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.813
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.813
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.813
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.813
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.813
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.813
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.813
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.813
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.813
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.813
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.813
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.813
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.813
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.813
LOC100050830 Equus caballus ENSECAG00000018407 I 0.813
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.813
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.813
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.813
SNRPB2 Homo sapiens ENSG00000125870 I 0.813
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.813
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.813
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.813
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.813
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.813
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.813
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.806
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.806
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.806
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.806
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.799
SNRPA Echinops telfairi ENSETEG00000019205 I 0.797
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.797
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.791
AAH72799 Xenopus laevis AAH72799 I 0.791
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.790
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.790
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.790
AAH84107 Xenopus laevis AAH84107 I 0.783
186191 Helobdella robusta 186191 I 0.783
snrpb2 Danio rerio ENSDARG00000039424 I 0.783
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.777
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.775
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.768
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.768
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.768
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.761
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.761
105398 Helobdella robusta 105398 I 0.761
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.748
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.746
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.746
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.739
LOAG_02293 Loa loa LOAG_02293 I 0.739
Bm1_37765 Brugia malayi Bm1_37765 I 0.739
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.732
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.727
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.727
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.719
Gm5145 Mus musculus ENSMUSG00000071273 I 0.710
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.710
SNRPA Microcebus murinus ENSMICG00000009766 I 0.703