CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GK25839
(
Drosophila willistoni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0227798
T44262_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.993
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.841
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.841
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.841
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.841
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.841
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.841
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.841
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.841
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0254982
RRM
9
80
IYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMR
FBpp0254982
RRM
144
209
LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAM
Links
Other
RRM
family RBPs
Other
Drosophila willistoni
RBPs
124 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
snf
Drosophila mojavensis
FBgn0069598
I
1.000
GJ16850
Drosophila virilis
FBgn0204029
I
1.000
GH24608
Drosophila grimshawi
FBgn0132064
I
1.000
snf
Drosophila melanogaster
FBgn0003449
D
0.993
GF21334
Drosophila ananassae
FBgn0098336
I
0.993
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.993
GE16390
Drosophila yakuba
FBgn0233919
I
0.993
GL14287
Drosophila persimilis
FBgn0151892
I
0.993
GM12396
Drosophila sechellia
FBgn0167333
I
0.993
GG18748
Drosophila erecta
FBgn0110957
I
0.993
AAEL002980
Aedes aegypti
AAEL002980
I
0.949
AAEL014167
Aedes aegypti
AAEL014167
I
0.949
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.942
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.942
AGAP011637
Anopheles gambiae
AGAP011637
I
0.928
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.920
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.906
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.899
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.892
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.884
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.884
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.884
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.862
snrpa
Danio rerio
ENSDARG00000018890
I
0.862
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.855
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.855
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.848
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.848
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.841
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.841
SNRPA
Homo sapiens
ENSG00000077312
D
0.841
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.841
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.841
SNRPA
Felis catus
ENSFCAG00000016209
I
0.841
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.841
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.841
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.841
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.841
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.841
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.841
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.841
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.841
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.841
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.841
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.841
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.841
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.841
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.841
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.841
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.841
CAA41021
Xenopus laevis
CAA41021
I
0.833
P45429
Xenopus laevis
P45429
I
0.833
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.833
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.833
AAH44979
Xenopus laevis
AAH44979
I
0.833
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.833
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.826
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.826
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.826
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.826
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.820
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.820
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.820
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.813
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.813
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.813
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.813
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.813
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.813
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.813
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.813
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.813
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.813
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.813
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.813
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.813
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.813
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.813
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.813
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.813
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.813
SNRPB2
Homo sapiens
ENSG00000125870
I
0.813
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.813
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.813
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.813
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.813
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.813
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.813
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.806
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.806
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.806
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.806
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.804
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.791
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.791
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.790
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.790
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.790
snrpb2
Danio rerio
ENSDARG00000039424
I
0.790
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.790
AAH72799
Xenopus laevis
AAH72799
I
0.784
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.783
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.777
AAH84107
Xenopus laevis
AAH84107
I
0.775
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.775
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.768
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.768
105398
Helobdella robusta
105398
I
0.768
Aqu1.229782
Amphimedon queenslandica
Aqu1.229782
I
0.763
186191
Helobdella robusta
186191
I
0.761
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.761
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.754
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.746
LOAG_02293
Loa loa
LOAG_02293
I
0.739
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.739
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.739
Bm1_37765
Brugia malayi
Bm1_37765
I
0.739
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.727
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.727
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.725
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.719
GD24751
Drosophila simulans
FBgn0196072
I
0.710
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.710
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.703