ENSGACG00000018932 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000018932 T37563_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.828
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.750
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000025029 RRM 23 86

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RALY Homo sapiens ENSG00000125970 D 0.703
HNRNPC Homo sapiens ENSG00000092199 D 0.828
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.750
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.828
RALY Pan troglodytes ENSPTRG00000013410 I 0.703
RALYL Pan troglodytes ENSPTRG00000020381 I 0.719
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.750
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.828
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.719
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.828
Raly Rattus norvegicus ENSRNOG00000017405 I 0.703
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.703
RALYL Sorex araneus ENSSARG00000002374 I 0.719
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.703
HNRNPC Sorex araneus ENSSARG00000003711 I 0.828
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.719
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.703
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.719
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.812
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.828
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.828
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.828
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.812
RALY Ochotona princeps ENSOPRG00000008423 I 0.703
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.906
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.812
RALYL Oryzias latipes ENSORLG00000012719 I 0.750
RALYL Oryzias latipes ENSORLG00000017934 I 0.766
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.766
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.766
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.828
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.703
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.703
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.828
RALYL Vicugna pacos ENSVPAG00000008501 I 0.719
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.844
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.750
raly Xenopus tropicalis ENSXETG00000019514 I 0.703
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.734
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.703
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.703
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.828
AAA60937 Xenopus laevis AAA60937 I 0.828
AAH41534 Xenopus laevis AAH41534 I 0.812
AAH71084 Xenopus laevis AAH71084 I 0.828
RALY Vicugna pacos ENSVPAG00000000373 I 0.703
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.828
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.719
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.703
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.812
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.703
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.828
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.703
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.906
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.781
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.891
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.812
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.719
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.828
RALY Tursiops truncatus ENSTTRG00000006590 I 0.703
P19600 Xenopus laevis P19600 I 0.828
RALY Anolis carolinensis ENSACAG00000008983 I 0.703
raly Danio rerio ENSDARG00000059972 I 0.703
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.828
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.719
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.703
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.719
Raly Dipodomys ordii ENSDORG00000013400 I 0.703
LOC100054239 Equus caballus ENSECAG00000012357 I 0.703
LOC100059269 Equus caballus ENSECAG00000017645 I 0.828
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.734
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.719
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.828
RALYL Echinops telfairi ENSETEG00000014028 I 0.719
zgc:55701 Danio rerio ENSDARG00000053810 I 0.891
zgc:55733 Danio rerio ENSDARG00000022579 I 0.891
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.812
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.828
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.719
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.828
RALY Canis familiaris ENSCAFG00000007490 I 0.703
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.703
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.703
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.719
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.828
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.781
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.703
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.812
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.828
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.750
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.922
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.766
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.828
RALY Macaca mulatta ENSMMUG00000018093 I 0.703
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.812
RALYL Macaca mulatta ENSMMUG00000031878 I 0.719
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.703
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.828
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.766
Raly Mus musculus ENSMUSG00000027593 I 0.703
Ralyl Mus musculus ENSMUSG00000039717 I 0.719
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.828
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.828
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.828
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.719
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.828
RALY Gallus gallus ENSGALG00000002054 I 0.703
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.750
RALY Gorilla gorilla ENSGGOG00000022709 I 0.703
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.828
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.719
RALY Loxodonta africana ENSLAFG00000000321 I 0.703
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.828
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.828
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.703
RALYL Microcebus murinus ENSMICG00000005558 I 0.719
RALY Myotis lucifugus ENSMLUG00000005330 I 0.703
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.828