CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMEUG00000015892
(
Macropus eugenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMEUG00000015892
T38287_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBMX
M344_0.6
Homo sapiens
CCM
SELEX
Cook et al.(2011)
922_19282290
0.930
RBMY1A1
M247_0.6
Homo sapiens
CWCAA
SELEX
Cook et al.(2011)
1053_17318228
0.789
RBMY1A1
M246_0.6
Homo sapiens
CWCAA
SELEX
Cook et al.(2011)
1052_17318228
0.789
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000014514
RRM
10
80
LFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAKDAARDMNGKLLDGKSIK
Links
Other
RRM
family RBPs
Other
Macropus eugenii
RBPs
83 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBMX
Homo sapiens
ENSG00000147274
D
0.930
RBMY1A1
Homo sapiens
ENSG00000234414
D
0.775
Rbmxrt
Mus musculus
ENSMUSG00000037070
I
0.915
HNRPG_PANTR
Pan troglodytes
ENSPTRG00000000933
I
0.901
RBMXL2
Pan troglodytes
ENSPTRG00000003312
I
0.873
XR_023586.1
Pan troglodytes
ENSPTRG00000004121
I
0.901
LOC750990
Pan troglodytes
ENSPTRG00000028802
I
0.789
ENSPTRG00000028821
Pan troglodytes
ENSPTRG00000028821
I
0.775
Q52NW1_PANTR
Pan troglodytes
ENSPTRG00000028822
I
0.789
ENSPPYG00000020771
Pongo pygmaeus
ENSPPYG00000020771
I
0.930
ENSPPYG00000019152
Pongo pygmaeus
ENSPPYG00000019152
I
0.873
ENSPPYG00000001177
Pongo pygmaeus
ENSPPYG00000001177
I
0.901
ENSMUSG00000049235
Mus musculus
ENSMUSG00000049235
I
0.915
Rbmxl2
Mus musculus
ENSMUSG00000073894
I
0.831
ENSOANG00000011670
Ornithorhynchus anatinus
ENSOANG00000011670
I
0.930
RBMXL1
Oryctolagus cuniculus
ENSOCUG00000007220
I
0.930
ENSOCUG00000021095
Oryctolagus cuniculus
ENSOCUG00000021095
I
0.873
RBMX
Oryctolagus cuniculus
ENSOCUG00000024093
I
0.930
ENSOCUG00000028230
Oryctolagus cuniculus
ENSOCUG00000028230
I
0.930
RBMXL3
Oryzias latipes
ENSORLG00000001692
I
0.845
XR_020119.1
Pan troglodytes
ENSPTRG00000028826
I
0.789
XR_019934.1
Pan troglodytes
ENSPTRG00000032589
I
0.789
ENSPTRG00000032590
Pan troglodytes
ENSPTRG00000032590
I
0.789
RBMXL3
Takifugu rubripes
ENSTRUG00000006031
I
0.831
RBMX
Tarsius syrichta
ENSTSYG00000009555
I
0.944
ENSTTRG00000003238
Tursiops truncatus
ENSTTRG00000003238
I
0.831
RBMXL1
Tursiops truncatus
ENSTTRG00000007322
I
0.930
ENSVPAG00000002726
Vicugna pacos
ENSVPAG00000002726
I
0.845
RBMXL1
Vicugna pacos
ENSVPAG00000005826
I
0.930
Ame_R008043
Ailuropoda melanoleuca
Ame_R008043
I
0.930
Ame_R020019
Ailuropoda melanoleuca
Ame_R020019
I
0.789
RBMXL3
Tetraodon nigroviridis
ENSTNIG00000016844
I
0.817
RBMX
Taeniopygia guttata
ENSTGUG00000002135
I
0.930
XR_020159.1
Pan troglodytes
ENSPTRG00000032591
I
0.789
RBMX
Pan troglodytes
ENSPTRG00000034071
I
0.887
Rbmx
Rattus norvegicus
ENSRNOG00000000866
I
0.930
Rbmxrtl
Rattus norvegicus
ENSRNOG00000012138
I
0.901
D3ZT57_RAT
Rattus norvegicus
ENSRNOG00000021946
I
0.803
D4AE41_RAT
Rattus norvegicus
ENSRNOG00000028858
I
0.901
RBMXL1
Sus scrofa
ENSSSCG00000012703
I
0.930
ENSTBEG00000001154
Tupaia belangeri
ENSTBEG00000001154
I
0.845
AAH70649
Xenopus laevis
AAH70649
I
0.873
Rbmx
Mus musculus
ENSMUSG00000031134
I
0.930
XM_001367159.1
Monodelphis domestica
ENSMODG00000014054
I
1.000
RBMX
Cavia porcellus
ENSCPOG00000012164
I
0.930
rbmx
Danio rerio
ENSDARG00000014244
I
0.789
ENSDNOG00000009042
Dasypus novemcinctus
ENSDNOG00000009042
I
0.831
RBMXL1
Dasypus novemcinctus
ENSDNOG00000017199
I
0.930
Rbmxl2
Dipodomys ordii
ENSDORG00000010267
I
0.845
LOC100054583
Equus caballus
ENSECAG00000021380
I
0.930
RBMX
Felis catus
ENSFCAG00000004779
I
0.803
RBMY1F
Homo sapiens
ENSG00000169800
I
0.761
RBMXL1
Callithrix jacchus
ENSCJAG00000032899
I
0.930
LOC100415631
Callithrix jacchus
ENSCJAG00000022240
I
0.859
HNRPG_BOVIN
Bos taurus
ENSBTAG00000011807
I
0.845
D3JUI8_BOVIN
Bos taurus
ENSBTAG00000013308
I
0.930
HNRPG_BOVIN
Bos taurus
ENSBTAG00000036140
I
0.845
RBMXL1
Canis familiaris
ENSCAFG00000018962
I
0.917
LOC100406653
Callithrix jacchus
ENSCJAG00000003626
I
0.930
RBMXL3
Callithrix jacchus
ENSCJAG00000006948
I
0.789
ENSCJAG00000013619
Callithrix jacchus
ENSCJAG00000013619
I
0.873
ENSCJAG00000016247
Callithrix jacchus
ENSCJAG00000016247
I
0.817
RBMXL2
Homo sapiens
ENSG00000170748
I
0.873
RBMXL3
Homo sapiens
ENSG00000175718
I
0.761
ENSLAFG00000005568
Loxodonta africana
ENSLAFG00000005568
I
0.930
ENSLAFG00000014037
Loxodonta africana
ENSLAFG00000014037
I
0.859
ENSLAFG00000020807
Loxodonta africana
ENSLAFG00000020807
I
0.803
ENSLAFG00000022169
Loxodonta africana
ENSLAFG00000022169
I
0.901
O97560_MACEU
Macropus eugenii
ENSMEUG00000013834
I
1.000
RBMX
Meleagris gallopavo
ENSMGAG00000003594
I
0.930
RBMXL1
Microcebus murinus
ENSMICG00000006856
I
0.930
RBMXL1
Myotis lucifugus
ENSMLUG00000013209
I
0.930
RBMXL1
Gorilla gorilla
ENSGGOG00000027619
I
0.930
RBMXL3
Gorilla gorilla
ENSGGOG00000027260
I
0.775
RBMXL1
Homo sapiens
ENSG00000213516
I
0.901
RBMY1J
Homo sapiens
ENSG00000226941
I
0.761
RBMY1E
Homo sapiens
ENSG00000242389
I
0.775
RBMY1B
Homo sapiens
ENSG00000242875
I
0.775
RBMY1D
Homo sapiens
ENSG00000244395
I
0.775
RBMXL3
Gasterosteus aculeatus
ENSGACG00000017237
I
0.845
Q5ZKQ9_CHICK
Gallus gallus
ENSGALG00000006457
I
0.930
Q2VIN1_9PRIM
Gorilla gorilla
ENSGGOG00000012016
I
0.901
ENSACAG00000009551
Anolis carolinensis
ENSACAG00000009551
I
0.930