HNRNPCL1 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000003025 T40301_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.938
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.844
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000002824 RRM 18 80

Links

Other RRM family RBPs
Other Procavia capensis RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RALY Homo sapiens ENSG00000125970 D 0.719
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.844
HNRNPC Homo sapiens ENSG00000092199 D 0.938
RALY Pan troglodytes ENSPTRG00000013410 I 0.719
RALYL Pan troglodytes ENSPTRG00000020381 I 0.750
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.844
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.938
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.750
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.719
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.938
Raly Rattus norvegicus ENSRNOG00000017405 I 0.734
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.734
RALYL Sorex araneus ENSSARG00000002374 I 0.750
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.703
HNRNPC Sorex araneus ENSSARG00000003711 I 0.938
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.938
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.750
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.922
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.938
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.938
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.938
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.922
RALY Ochotona princeps ENSOPRG00000008423 I 0.719
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.844
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.781
RALYL Oryzias latipes ENSORLG00000012719 I 0.750
RALYL Oryzias latipes ENSORLG00000017934 I 0.750
RALY Procavia capensis ENSPCAG00000016867 I 0.719
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.859
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.938
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.719
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.703
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.938
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.734
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.938
RALY Vicugna pacos ENSVPAG00000000373 I 0.734
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.938
RALYL Vicugna pacos ENSVPAG00000008501 I 0.750
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.859
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.703
raly Xenopus tropicalis ENSXETG00000019514 I 0.734
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.734
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.734
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.938
AAA60937 Xenopus laevis AAA60937 I 0.859
AAH41534 Xenopus laevis AAH41534 I 0.875
AAH71084 Xenopus laevis AAH71084 I 0.859
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.750
RALY Tursiops truncatus ENSTTRG00000006590 I 0.734
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.938
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.734
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.734
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.922
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.750
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.734
RALY Tupaia belangeri ENSTBEG00000009812 I 0.719
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.750
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.828
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.750
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.797
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.734
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.750
P19600 Xenopus laevis P19600 I 0.859
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.938
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.938
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.922
zgc:55733 Danio rerio ENSDARG00000022579 I 0.828
zgc:55701 Danio rerio ENSDARG00000053810 I 0.750
raly Danio rerio ENSDARG00000059972 I 0.719
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.938
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.719
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.734
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.750
Raly Dipodomys ordii ENSDORG00000013400 I 0.734
LOC100054239 Equus caballus ENSECAG00000012357 I 0.734
LOC100059269 Equus caballus ENSECAG00000017645 I 0.938
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.703
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.750
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.922
RALY Cavia porcellus ENSCPOG00000000309 I 0.734
RALY Anolis carolinensis ENSACAG00000008983 I 0.750
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.938
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.734
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.938
RALY Canis familiaris ENSCAFG00000007490 I 0.734
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.734
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.734
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.750
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.938
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.875
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.703
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.719
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.922
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.719
RALYL Echinops telfairi ENSETEG00000014028 I 0.750
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.938
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.750
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.938
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.875
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.938
RALY Macaca mulatta ENSMMUG00000018093 I 0.719
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.906
RALYL Macaca mulatta ENSMMUG00000031878 I 0.750
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.922
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.828
Raly Mus musculus ENSMUSG00000027593 I 0.734
Ralyl Mus musculus ENSMUSG00000039717 I 0.750
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.938
RALY Myotis lucifugus ENSMLUG00000005330 I 0.734
RALYL Microcebus murinus ENSMICG00000005558 I 0.750
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.750
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.812
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.766
RALY Gallus gallus ENSGALG00000002054 I 0.750
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.828
RALY Gorilla gorilla ENSGGOG00000022709 I 0.719
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.938
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.812
RALY Loxodonta africana ENSLAFG00000000321 I 0.734
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.938
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.922
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.750
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.922