CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_001153149.1
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000034109
T40820_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.984
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.906
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.734
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000059461
RRM
18
81
VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIADQVVD
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
128 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa018635m
Prunus persica
ppa018635m
N
0.000
Medtr2g005610
Medicago truncatula
Medtr2g005610
N
0.000
GRMZM2G303312
Zea mays
GRMZM2G303312
N
0.000
mgf019846m
Mimulus guttatus
mgf019846m
N
0.000
mgf017987m
Mimulus guttatus
mgf017987m
N
0.000
mgf015583m
Mimulus guttatus
mgf015583m
N
0.000
mgf014829m
Mimulus guttatus
mgf014829m
N
0.000
mgf014143m
Mimulus guttatus
mgf014143m
N
0.000
mgf001716m
Mimulus guttatus
mgf001716m
N
0.000
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.000
Glyma16g00490.1
Glycine max
Glyma16g00490.1
N
0.000
Glyma08g24210.1
Glycine max
Glyma08g24210.1
N
0.000
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.000
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.000
ppa003557m
Prunus persica
ppa003557m
N
0.000
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.000
MDP0000488248
Malus x domestica
MDP0000488248
N
0.000
MDP0000306387
Malus x domestica
MDP0000306387
N
0.000
MDP0000256033
Malus x domestica
MDP0000256033
N
0.000
MDP0000132385
Malus x domestica
MDP0000132385
N
0.000
LjSGA_073042.1
Lotus japonicus
LjSGA_073042.1
N
0.000
LjSGA_044186.1
Lotus japonicus
LjSGA_044186.1
N
0.000
LjSGA_034621.1
Lotus japonicus
LjSGA_034621.1
N
0.000
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.000
chr6.CM0885.320.nc
Lotus japonicus
chr6.CM0885.320.nc
N
0.000
Glyma07g36110.1
Glycine max
Glyma07g36110.1
N
0.000
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.000
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.000
GSVIVG00036696001
Vitis vinifera
GSVIVG00036696001
N
0.000
GSVIVG00023248001
Vitis vinifera
GSVIVG00023248001
N
0.000
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.000
XM_002894050.1
Arabidopsis lyrata
fgenesh2_kg.1__3903__AT1G48110.2
N
0.000
BRADI5G01317
Brachypodium distachyon
BRADI5G01317
N
0.000
BRADI3G06027
Brachypodium distachyon
BRADI3G06027
N
0.000
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.000
BGIOSIBCE017245
Oryza indica
BGIOSIBCE017245
N
0.000
BGIOSIBCE013986
Oryza indica
BGIOSIBCE013986
N
0.000
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.000
ECT7
Arabidopsis thaliana
AT1G48110-TAIR-G
N
0.000
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.000
LOC_Os04g04000
Oryza sativa
LOC_Os04g04000
N
0.000
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.000
cassava14932.m1
Manihot esculenta
cassava14932.m1
N
0.000
cassava13324.valid.m1
Manihot esculenta
cassava13324.valid.m1
N
0.000
cassava13323.valid.m1
Manihot esculenta
cassava13323.valid.m1
N
0.000
cassava13322.valid.m1
Manihot esculenta
cassava13322.valid.m1
N
0.000
29889.m003364
Ricinus communis
29889.m003364
N
0.000
29765.m000746
Ricinus communis
29765.m000746
N
0.000
SB09G000580
Sorghum bicolor
Sb09g000580
N
0.000
B9N770_POPTR
Populus trichocarpa
POPTR_0022s00680
N
0.000
B9N0D5_POPTR
Populus trichocarpa
POPTR_0004s23250
N
0.000
LOC_Os05g01520
Oryza sativa
LOC_Os05g01520
N
0.000
PK26094.1
Cannabis sativa
PK26094.1
N
0.000