XM_001153149.1 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000034109 T40820_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.984
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.906
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000059461 RRM 18 81

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa018635m Prunus persica ppa018635m N 0.000
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.000
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.000
mgf019846m Mimulus guttatus mgf019846m N 0.000
mgf017987m Mimulus guttatus mgf017987m N 0.000
mgf015583m Mimulus guttatus mgf015583m N 0.000
mgf014829m Mimulus guttatus mgf014829m N 0.000
mgf014143m Mimulus guttatus mgf014143m N 0.000
mgf001716m Mimulus guttatus mgf001716m N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.000
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.000
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.000
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.000
ppa003557m Prunus persica ppa003557m N 0.000
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.000
MDP0000488248 Malus x domestica MDP0000488248 N 0.000
MDP0000306387 Malus x domestica MDP0000306387 N 0.000
MDP0000256033 Malus x domestica MDP0000256033 N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.000
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.000
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.000
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.000
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.000
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.000
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.000
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.000
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.000
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.000
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.000
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.000
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.000
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.000
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.000
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.000
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.000
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.000
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.000
29889.m003364 Ricinus communis 29889.m003364 N 0.000
29765.m000746 Ricinus communis 29765.m000746 N 0.000
SB09G000580 Sorghum bicolor Sb09g000580 N 0.000
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.000
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.000
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.000
PK26094.1 Cannabis sativa PK26094.1 N 0.000