B9GGV7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s38640 T45444_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s38640.1 RRM 77 146
POPTR_0001s38640.1 RRM 177 246

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK03611.1 Cannabis sativa PK03611.1 N 0.736
Glyma06g33940.1 Glycine max Glyma06g33940.1 N 0.814
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.807
mgf018937m Mimulus guttatus mgf018937m N 0.782
GRMZM2G049866 Zea mays GRMZM2G049866 N 0.729
GRMZM2G117715 Zea mays GRMZM2G117715 N 0.729
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.821
MDP0000250519 Malus x domestica MDP0000250519 N 0.843
MDP0000410930 Malus x domestica MDP0000410930 N 0.807
MDP0000575061 Malus x domestica MDP0000575061 N 0.807
MDP0000596919 Malus x domestica MDP0000596919 N 0.836
MDP0000709988 Malus x domestica MDP0000709988 N 0.700
Cucsa.273510 Cucumis sativus Cucsa.273510 N 0.793
cassava28996.valid.m1 Manihot esculenta cassava28996.valid.m1 N 0.721
PK28408.1 Cannabis sativa PK28408.1 N 0.850
AT3G15010 Arabidopsis thaliana AT3G15010-TAIR-G N 0.800
BRADI2G43460 Brachypodium distachyon BRADI2G43460 N 0.714
XM_002882862.1 Arabidopsis lyrata fgenesh2_kg.3__1628__AT3G15010.2 N 0.786
LOC_Os01g42820 Oryza sativa LOC_Os01g42820 N 0.721
SB03G027820 Sorghum bicolor Sb03g027820 N 0.736
XM_002894385.1 Arabidopsis lyrata scaffold_105150.1 N 0.786
29900.m001607 Ricinus communis 29900.m001607 N 0.736
cassava18809.valid.m1 Manihot esculenta cassava18809.valid.m1 N 0.721
cassava28994.valid.m1 Manihot esculenta cassava28994.valid.m1 N 0.721
cassava28995.valid.m1 Manihot esculenta cassava28995.valid.m1 N 0.721
ppa005857m Prunus persica ppa005857m N 0.836