fgeneshTA2_pg.C_scaffold_8000290 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshTA2_pg.C_scaffold_8000290 T52539_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_8000290 RRM 234 304

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

173 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.803
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.718
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.873
83285 Helobdella robusta 83285 N 0.775
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.704
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.746
PHUM268300 Pediculus humanus PHUM268300 N 0.803
NCU10166 Neurospora crassa NCU10166 N 0.803
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.761
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.789
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.732
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.732
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.789
estExt_fgenesh1_kg.C_40083 Melampsora laricis populina estExt_fgenesh1_kg.C_40083 N 0.761
estExt_fgenesh1_kg.C_170006 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_170006 N 0.789
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.718
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.718
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.845
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.746
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.704
GE10772 Drosophila yakuba FBgn0228614 N 0.746
GK13166 Drosophila willistoni FBgn0215175 N 0.746
GJ23668 Drosophila virilis FBgn0210765 N 0.761
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.817
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.845
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.859
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.831
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.789
PPIL4 Sorex araneus ENSSARG00000011244 N 0.817
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.817
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.817
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.817
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.817
sig-7 Caenorhabditis elegans F39H2.2 N 0.732
GD18267 Drosophila simulans FBgn0189800 N 0.746
GM23461 Drosophila sechellia FBgn0178328 N 0.746
GL13859 Drosophila persimilis FBgn0151464 N 0.761
GI24038 Drosophila mojavensis FBgn0146761 N 0.761
GH18460 Drosophila grimshawi FBgn0125927 N 0.761
GG12319 Drosophila erecta FBgn0104609 N 0.746
GF18772 Drosophila ananassae FBgn0095789 N 0.761
CG5808 Drosophila melanogaster FBgn0027617 N 0.746
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.817
estExt_fgenesh3_pm.C_240021 Chlorella NC64A estExt_fgenesh3_pm.C_240021 N 0.746
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.775
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.761
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.761
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.732
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.732
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.746
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.732
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.746
EDO07903.1 Babesia bovis EDO07903.1 N 0.704
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.718
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.746
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.732
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.775
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.775
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.775
Smp_165540 Schistosoma mansoni Smp_165540 N 0.775
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.775
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.761
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.803
Minc10084 Meloidogyne incognita Minc10084 N 0.761
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.817
AB03196.1 Alternaria brassicicola AB03196.1 N 0.789
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.775
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.718
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.789
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.775
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.732
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.775
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.803
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.775
estExt_Genewise1.C_23809 Thielavia terrestris estExt_Genewise1.C_23809 N 0.761
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.732
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.789
fgenesh1_pm.C_scaffold_9000117 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_9000117 N 0.761
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.761
EFA80431.1 Polysphondylium pallidum EFA80431.1 N 0.718
EAT81165.2 Phaeosphaeria nodorum EAT81165.2 N 0.803
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.746
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.775
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.803
fgeneshDP_pm.C_scaffold_5000011 Dictyostelium purpureum fgeneshDP_pm.C_scaffold_5000011 N 0.704
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.803
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.746
DGIL_AUG5s502g5t1 Acyrtosiphon pisum DGIL_AUG5s502g5t1 N 0.732
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.718
SOCG_02586 Schizosaccharomyces octosporus SOCG_02586 N 0.718
SNOG_11457 Stagonospora nodorum SNOG_11457 N 0.803
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.718
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.732
PTTG_06854 Puccinia triticina PTTG_06854 N 0.732
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.718
PTRG_04608 Pyrenophora tritici repentis PTRG_04608 N 0.803
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.817
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.761
TERG_06028 Trichophyton rubrum TERG_06028 N 0.761
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.746
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.746
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.789
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.775
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.775
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.761
UM03490 Ustilago maydis UM03490 N 0.746
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.761
PGTG_14680 Puccinia graminis PGTG_14680 N 0.746
PGTG_10482 Puccinia graminis PGTG_10482 N 0.761
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.761
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.718
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.761
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.789
CAOG_07850 Capsaspora owczarzaki CAOG_07850 N 0.718
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.761
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.775
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.761
AMAG_02172 Allomyces macrogynus AMAG_02172 N 0.704
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.746
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.761
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.803
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.761
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.775
MCYG_06073 Microsporum canis MCYG_06073 N 0.761
LOAG_08216 Loa loa LOAG_08216 N 0.775
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.761
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.746
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.789
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.789
AMAG_00661 Allomyces macrogynus AMAG_00661 N 0.704
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.817
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.817
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.817
PPIL4 Gallus gallus ENSGALG00000012364 N 0.831
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.817
PPIL4 Homo sapiens ENSG00000131013 N 0.817
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.803
PPIL4 Equus caballus ENSECAG00000021819 N 0.817
ppil4 Danio rerio ENSDARG00000043854 N 0.803
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.831
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.817
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.817
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.817
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.817
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.817
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.817
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.831
Ppil4 Mus musculus ENSMUSG00000015757 N 0.817
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.817
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.817
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.789
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.817
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.792
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.761
An12g00490 Aspergillus niger CADANGAG00009498 N 0.761
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.761
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.775
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.761
AGAP008136 Anopheles gambiae AGAP008136 N 0.775
AAEL005690 Aedes aegypti AAEL005690 N 0.746
AAEL005541 Aedes aegypti AAEL005541 N 0.746
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.775
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.746
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.761
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.817
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.817
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.817
CRE29496 Caenorhabditis remanei CRE29496 N 0.732
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.746
CJA06296 Caenorhabditis japonica CJA06296 N 0.732
CBN08292 Caenorhabditis brenneri CBN08292 N 0.732
CBG12494 Caenorhabditis briggsae CBG12494 N 0.732
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.761