CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002873169.1
(
Arabidopsis lyrata
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
fgenesh1_pg.C_scaffold_6000426
T60673_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_6000426
S1
18
92
PDVDMAVMIQVKNIADMGAYVSLLEYNDIEGMILFSELSRRRIRSISSLIKVGRIEPVMVLRVDRERGYIDLSKR
Links
Other
S1
family RBPs
Other
Arabidopsis lyrata
RBPs
190 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_110300
Plasmodium berghei
PBANKA_110300
N
0.000
PCHAS_110270
Plasmodium chabaudi
PCHAS_110270
N
0.000
PFE0160c
Plasmodium falciparum
PFE0160c
N
0.000
PKH_102990
Plasmodium knowlesi
PKH_102990
N
0.000
PVX_097740
Plasmodium vivax
PVX_097740
N
0.000