ENSORLG00000000589 (Oryzias latipes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSORLG00000000589 T03124_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.759
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.759
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.759
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.759
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.759
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.759
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.759
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000000724 CCCH ZF 69 95
ENSORLP00000000724 CCCH ZF 107 133

Links

Other CCCH ZF family RBPs
Other Oryzias latipes RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0300010273 Ostreococcus tauri 0300010273 I 0.722
153596 Helobdella robusta 153596 N 0.704
64152 Helobdella robusta 64152 N 0.778
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.852
AAD24208 Xenopus laevis AAD24208 I 0.870
AAD24209 Xenopus laevis AAD24209 I 0.852
AAEL002308 Aedes aegypti AAEL002308 I 0.796
AAH44086 Xenopus laevis AAH44086 I 0.870
AAH84197 Xenopus laevis AAH84197 I 0.870
AAH84221 Xenopus laevis AAH84221 I 0.852
AAI00163 Xenopus laevis AAI00163 I 0.870
AGAP010954 Anopheles gambiae AGAP010954 N 0.815
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.741
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.741
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.852
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.870
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.852
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.759
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.741
BAC54909 Xenopus laevis BAC54909 I 0.852
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.796
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.944
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.796
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.796
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.000
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.704
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.852
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.741
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.796
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.759
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.944
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.759
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.852
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.759
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.870
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.870
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.926
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.926
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.833
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.870
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.833
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.000
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.741
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.796
GE17025 Drosophila yakuba FBgn0234511 N 0.796
GF21384 Drosophila ananassae FBgn0098386 N 0.796
GG17735 Drosophila erecta FBgn0109957 N 0.796
GH17894 Drosophila grimshawi FBgn0125362 N 0.815
GI21684 Drosophila mojavensis FBgn0144414 N 0.815
GJ15863 Drosophila virilis FBgn0203050 N 0.815
GK25600 Drosophila willistoni FBgn0227559 N 0.815
GL13141 Drosophila persimilis FBgn0150747 N 0.796
GM11580 Drosophila sechellia FBgn0166523 N 0.796
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.741
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.796
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.852
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.796
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.759
LOC100063597 Equus caballus ENSECAG00000018860 I 0.852
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.870
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.759
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.852
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.833
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.722
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.870
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.796
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.870
Q805B4 Xenopus laevis Q805B4 I 0.852
SNAPOd2T00019452001 Oikopleura dioica SNAPOd2T00019452001 N 0.000
Tis11 Drosophila melanogaster FBgn0011837 N 0.796
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.852
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.833
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.833
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.833
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.815
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.833
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.852
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.852
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.759
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.759
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.722
ZFP36 Danio rerio ENSDARG00000044395 I 0.741
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.759
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.759
ZFP36 Homo sapiens ENSG00000128016 D 0.759
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.759
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.759
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.759
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.759
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.759
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.741
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.833
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.852
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.852
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.852
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.852
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.852
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.852
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.852
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.870
ZFP36L1 Homo sapiens ENSG00000185650 I 0.852
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.852
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.852
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.852
ZFP36L1 Otolemur garnettii ENSOGAG00000010033 N 0.745
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.870
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.870
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.852
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.852
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.852
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.852
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.852
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.852
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.870
zfp36l1a Danio rerio ENSDARG00000016154 I 0.852
zfp36l1b Danio rerio ENSDARG00000021443 I 0.815
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.852
zfp36l2 Danio rerio ENSDARG00000021806 I 0.889
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.870
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.870
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.870
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.870
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.870
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.870
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.870
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.870
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.870
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.870
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.870
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.870
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.870
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.907
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.870
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.870
ZFP36L2 Homo sapiens ENSG00000152518 I 0.870
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.815
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.889
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.852
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.870
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.833
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.796
zgc:114130 Danio rerio ENSDARG00000040725 I 0.833