CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.2.668.1
(
Sporobolomyces roseus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
e_gw1.2.668.1
T04896_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.2.668.1
CCCH ZF
78
103
PKTVLCAFFKAGRCQKGNKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Sporobolomyces roseus
RBPs
154 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh3_pm.C_240021
Chlorella NC64A
estExt_fgenesh3_pm.C_240021
N
0.000
estExt_fgeneshCV_pg.C_40316
Chlorella vulgaris
estExt_fgeneshCV_pg.C_40316
N
0.000
e_gw1.4.423.1
Coccomyxa C 169
e_gw1.4.423.1
N
0.000