ENSPPYG00000003010 (Pongo pygmaeus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSPPYG00000003010 T07316_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.986
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.986
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000003487 RRM 4 66
ENSPPYP00000003487 RRM 80 142
ENSPPYP00000003487 CCHC ZF 160 177
ENSPPYP00000003488 RRM 4 66
ENSPPYP00000003488 RRM 80 142
ENSPPYP00000003488 CCHC ZF 160 170

Links

Other CCHC ZF,RRM family RBPs
Other Pongo pygmaeus RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark.10526_g Serpula lacrymans Genemark.10526_g N 0.000
Genemark.11049_g Serpula lacrymans Genemark.11049_g N 0.000
Genemark.11600_g Serpula lacrymans Genemark.11600_g N 0.000
Genemark.11813_g Serpula lacrymans Genemark.11813_g N 0.000
Genemark.12016_g Serpula lacrymans Genemark.12016_g N 0.000
Genemark.12122_g Serpula lacrymans Genemark.12122_g N 0.000
Genemark.12199_g Serpula lacrymans Genemark.12199_g N 0.000
Genemark.1877_g Serpula lacrymans Genemark.1877_g N 0.000
Genemark.2320_g Serpula lacrymans Genemark.2320_g N 0.000
Genemark.2532_g Serpula lacrymans Genemark.2532_g N 0.000
Genemark.2652_g Serpula lacrymans Genemark.2652_g N 0.000
Genemark.3014_g Serpula lacrymans Genemark.3014_g N 0.000
Genemark.3124_g Serpula lacrymans Genemark.3124_g N 0.000
Genemark.4399_g Serpula lacrymans Genemark.4399_g N 0.000
Genemark.469_g Serpula lacrymans Genemark.469_g N 0.000
Genemark.4749_g Serpula lacrymans Genemark.4749_g N 0.000
Genemark.4999_g Serpula lacrymans Genemark.4999_g N 0.000
Genemark.5111_g Serpula lacrymans Genemark.5111_g N 0.000
Genemark.6054_g Serpula lacrymans Genemark.6054_g N 0.000
Genemark.618_g Serpula lacrymans Genemark.618_g N 0.000
Genemark.7257_g Serpula lacrymans Genemark.7257_g N 0.000
Genemark.8022_g Serpula lacrymans Genemark.8022_g N 0.000
Genemark.8882_g Serpula lacrymans Genemark.8882_g N 0.000
Genemark.940_g Serpula lacrymans Genemark.940_g N 0.000
Genemark.9714_g Serpula lacrymans Genemark.9714_g N 0.000
Genemark.983_g Serpula lacrymans Genemark.983_g N 0.000
Minc10827 Meloidogyne incognita Minc10827 N 0.000