CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os03g02500
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os03g02500
T10983_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os03g02500.1
CCHC ZF
300
317
GDCFVCGKSGHWAKDCPE
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
118 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.8306_g
Serpula lacrymans
Genemark.8306_g
N
0.000
Minc02053
Meloidogyne incognita
Minc02053
N
0.000
Minc08303
Meloidogyne incognita
Minc08303
N
0.000
Minc15639
Meloidogyne incognita
Minc15639
N
0.000
Minc19150
Meloidogyne incognita
Minc19150
N
0.000