CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHDRBS3
(
Loxodonta africana
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSLAFG00000004849
T18920_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
1.000
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.857
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.753
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.753
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000004062
KH
45
127
QKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEA
Links
Other
KH
family RBPs
Other
Loxodonta africana
RBPs
102 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R004137
Ailuropoda melanoleuca
Ame_R004137
N
0.000
ENSCAFG00000018581
Canis familiaris
ENSCAFG00000018581
N
0.000
ENSGGOG00000010478
Gorilla gorilla
ENSGGOG00000010478
N
0.000
ENSMEUG00000008083
Macropus eugenii
ENSMEUG00000008083
N
0.000
ENSMICG00000010912
Microcebus murinus
ENSMICG00000010912
N
0.000
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.000
ENSPPYG00000018709
Pongo pygmaeus
ENSPPYG00000018709
N
0.000
ENSTBEG00000002499
Tupaia belangeri
ENSTBEG00000002499
N
0.000
HNRNPA2B1
Sorex araneus
ENSSARG00000007984
N
0.000
HNRNPA3
Macaca mulatta
ENSMMUG00000011937
N
0.000