CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.1.604.1
(
Mucor circinelloides
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
e_gw1.1.604.1
T20746_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.1.604.1
KH
144
193
FVKRRQRLIGPNGSTLKAIELLTKCYMMVQGNTVSAMGPYKGLKDLRRIV
Links
Other
KH
family RBPs
Other
Mucor circinelloides
RBPs
150 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_045660
Aspergillus clavatus
CADACLAG00004652
N
0.000
AFUA_4G06350
Aspergillus fumigatus
CADAFUAG00008260
N
0.000
AMAG_03225
Allomyces macrogynus
AMAG_03225
N
0.000
augustus-scaffold_1.g441
Schizophyllum commune
augustus-scaffold_1.g441
N
0.000
CC1G_06273
Coprinopsis cinerea
CC1G_06273
N
0.000
estExt_fgenesh2_kg.C_71062
Serpula lacrymans
estExt_fgenesh2_kg.C_71062
N
0.000
estExt_Genewise1Plus.C_30445
Agaricus bisporus
estExt_Genewise1Plus.C_30445
N
0.000
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.000
e_gw1.16.107.1
Emiliania huxleyi
e_gw1.16.107.1
N
0.000
e_gw1.35.197.1
Physcomitrella patens
e_gw1.35.197.1
N
0.000
e_gw1.8.125.1
Emiliania huxleyi
e_gw1.8.125.1
N
0.000
fgenesh1_pg.C_scaffold_4000265
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_4000265
N
0.000
fgenesh1_pm.00609_#_590
Aspergillus carbonarius
fgenesh1_pm.00609_#_590
N
0.000
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.000
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.000
gw1.198.122.1
Physcomitrella patens
gw1.198.122.1
N
0.000
gw1.5.1084.1
Ostreococcus RCC809
gw1.5.1084.1
N
0.000
MCYG_01275
Microsporum canis
MCYG_01275
N
0.000
NFIA_109800
Neosartorya fischeri
CADNFIAG00009499
N
0.000
PMAA_027560
Penicillium marneffei
PMAA_027560
N
0.000
SOCG_03680
Schizosaccharomyces octosporus
SOCG_03680
N
0.000
YALI0F14245g
Yarrowia lipolytica
YALI0F14245g
N
0.000