GRMZM2G404897 (Zea mays)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 GRMZM2G404897 T27661_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G404897_P01 RanBP ZF 6 35
GRMZM2G404897_P01 RanBP ZF 54 78
GRMZM2G404897_P01 RanBP ZF 110 141
GRMZM2G404897_P02 RanBP ZF 6 35
GRMZM2G404897_P02 RanBP ZF 54 78
GRMZM2G404897_P02 RanBP ZF 110 141
GRMZM2G404897_P03 RanBP ZF 6 35
GRMZM2G404897_P03 RanBP ZF 54 78
GRMZM2G404897_P03 RanBP ZF 110 141
GRMZM2G404897_P04 RanBP ZF 17 46
GRMZM2G404897_P04 RanBP ZF 65 89
GRMZM2G404897_P04 RanBP ZF 121 152

Links

Other RanBP ZF family RBPs
Other Zea mays RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.767
29848.m004659 Ricinus communis 29848.m004659 N 0.755
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.774
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.750
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.731
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.713
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.742
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.785
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.711
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.874
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.736
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.725
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.756
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.756
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.733
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.745
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.713
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.702
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.713
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.713
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.702
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.747
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.769
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.710
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.723
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.767
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.898
MDP0000240686 Malus x domestica MDP0000240686 N 0.713
MDP0000269288 Malus x domestica MDP0000269288 N 0.713
MDP0000876872 Malus x domestica MDP0000876872 N 0.702
ppa012687m Prunus persica ppa012687m N 0.723
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.758
SB10G002790 Sorghum bicolor Sb10g002790 N 0.989
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.702
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.720