cassava25023.valid.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava25023.valid.m1 T27313_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava25023.valid.m1 RanBP ZF 3 30
cassava25023.valid.m1 RanBP ZF 55 82
cassava25023.valid.m1 RanBP ZF 111 142

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 1.000
29841.m002811 Ricinus communis 29841.m002811 N 0.967
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.933
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.924
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.914
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.871
ppa012687m Prunus persica ppa012687m N 0.840
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.839
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.839
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.830
MDP0000240686 Malus x domestica MDP0000240686 N 0.830
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.830
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.828
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.828
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.819
29848.m004659 Ricinus communis 29848.m004659 N 0.819
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.819
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.815
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.809
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.809
MDP0000269288 Malus x domestica MDP0000269288 N 0.809
MDP0000876872 Malus x domestica MDP0000876872 N 0.809
ppa012737m Prunus persica ppa012737m N 0.798
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.787
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.787
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.769
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.766
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.756
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.755
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.753
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.745
SB10G002790 Sorghum bicolor Sb10g002790 N 0.744
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.734
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.734
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.734
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.734
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.725
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.722
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.713