cassava20678.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava20678.m1 T27307_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava20678.m1 RanBP ZF 3 32
cassava20678.m1 RanBP ZF 49 77
cassava20678.m1 RanBP ZF 107 138

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29848.m004659 Ricinus communis 29848.m004659 N 0.872
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.851
ppa012737m Prunus persica ppa012737m N 0.819
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.819
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.809
MDP0000876872 Malus x domestica MDP0000876872 N 0.809
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.798
MDP0000269288 Malus x domestica MDP0000269288 N 0.798
ppa012687m Prunus persica ppa012687m N 0.798
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.798
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.798
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.787
MDP0000240686 Malus x domestica MDP0000240686 N 0.787
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.787
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.787
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.787
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.787
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.777
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.769
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.769
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.766
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.766
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.766
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.766
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.758
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.758
29841.m002811 Ricinus communis 29841.m002811 N 0.755
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.755
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.747
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.745
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.745
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.745
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.745
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.745
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.725
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.725
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.723
SB10G002790 Sorghum bicolor Sb10g002790 N 0.714