cassava36675.valid.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava36675.valid.m1 T27320_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava36675.valid.m1 RanBP ZF 3 32
cassava36675.valid.m1 RanBP ZF 56 83
cassava36675.valid.m1 RanBP ZF 112 143

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.956
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.933
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.933
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.925
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.924
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.860
ppa012687m Prunus persica ppa012687m N 0.851
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.849
MDP0000240686 Malus x domestica MDP0000240686 N 0.840
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.840
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.840
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.839
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.839
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.830
29848.m004659 Ricinus communis 29848.m004659 N 0.830
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.830
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.828
MDP0000876872 Malus x domestica MDP0000876872 N 0.819
MDP0000269288 Malus x domestica MDP0000269288 N 0.819
ppa012737m Prunus persica ppa012737m N 0.809
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.798
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.798
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.798
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.798
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.785
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.774
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.766
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.755
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.755
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.753
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.745
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.734
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.734
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.734
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.733
SB10G002790 Sorghum bicolor Sb10g002790 N 0.722
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.713
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.703
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.700