PABPN1L (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000025951 T35919_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000018565 RRM 144 213

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAG36902 Xenopus laevis AAG36902 I 0.704
AAH45063 Xenopus laevis AAH45063 I 0.704
AAH73657 Xenopus laevis AAH73657 I 0.704
AAR26262 Xenopus laevis AAR26262 I 0.704
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.704
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.718
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.718
Bm1_48895 Brugia malayi Bm1_48895 I 0.700
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.718
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.718
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.718
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.831
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.761
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.704
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.700
LOAG_03634 Loa loa LOAG_03634 I 0.700
LOC100051357 Equus caballus ENSECAG00000000378 I 0.829
LOC100055599 Equus caballus ENSECAG00000011652 I 0.718
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.718
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.718
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.718
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.729
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.718
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.718
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.718
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.718
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.718
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.729
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.729
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.718
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.718
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.704
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.718
pabpn1 Danio rerio ENSDARG00000045373 I 0.743
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.718
PABPN1 Homo sapiens ENSG00000100836 D 0.718
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.729
PABPN1 Gallus gallus ENSGALG00000006242 I 0.761
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.718
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.718
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.718
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.718
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.746
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.704
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.761
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.746
PABPN1L Bos taurus ENSBTAG00000023752 N 0.817
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.775
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.746
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.800
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.775
PABPN1L Homo sapiens ENSG00000205022 I 0.817
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.857
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.803
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.803
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.817
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.746
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.704
Q9DDY9 Xenopus laevis Q9DDY9 I 0.704
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.700
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.803
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.803