ELAVL1 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000012985 T36970_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.825
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.825
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.825
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.825
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.825
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.825
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000010534 RRM 1 34
ENSETEP00000010534 RRM 50 118
ENSETEP00000010534 RRM 188 258

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.782
AAH86269 Xenopus laevis AAH86269 I 0.787
AAI16460 Xenopus laevis AAI16460 I 0.743
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.825
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.820
ELAVL1 Procavia capensis ENSPCAG00000016012 I 1.000
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.731
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.701
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.820
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.825
Elavl1 Mus musculus ENSMUSG00000040028 I 0.820
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.825
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.820
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.815
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.806
ELAVL1 Tupaia belangeri ENSTBEG00000015038 N 0.776
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.815
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.708
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.716
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.825
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.791
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.825
ELAVL1 Felis catus ENSFCAG00000014947 I 0.825
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.810
elavl1 Danio rerio ENSDARG00000038695 I 0.762
ELAVL1 Homo sapiens ENSG00000066044 D 0.825
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.724
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.994
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.711
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.825
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.825
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.815
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.825
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.820
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.825
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.820
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.795
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.767
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.733
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.720
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.731
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.825
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 1.000
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.825
hug Danio rerio ENSDARG00000016405 I 0.725
LOC100060819 Equus caballus ENSECAG00000019459 I 0.820
Q1JQ73 Xenopus laevis Q1JQ73 I 0.743
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.820
Q5U259 Xenopus laevis Q5U259 I 0.787
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.815