LOC_Os02g39890 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os02g39890 T44966_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g39890.1 RRM 36 106
LOC_Os02g39890.2 RRM 36 106

Links

Other RRM family RBPs
Other Oryza sativa RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29983.m003140 Ricinus communis 29983.m003140 N 0.887
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.901
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.718
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.732
B9MYE5_POPTR Populus trichocarpa POPTR_0017s04640 N 0.873
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.704
Bm1_02935 Brugia malayi Bm1_02935 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.944
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.915
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.915
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.873
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.887
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.930
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.732
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.718
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.718
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.718
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.718
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.732
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.732
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.732
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.732
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.732
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.704
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.803
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.887
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.887
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.944
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.915
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.775
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.775
LOAG_03270 Loa loa LOAG_03270 N 0.718
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.704
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.732
MDP0000315402 Malus x domestica MDP0000315402 N 0.901
mgf009384m Mimulus guttatus mgf009384m N 0.817
mgf009822m Mimulus guttatus mgf009822m N 0.873
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.704
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.732
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.732
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.718
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.732
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.732
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.718
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.732
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.732
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.732
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.732
NCBP2 Homo sapiens ENSG00000114503 N 0.732
NCBP2 Equus caballus ENSECAG00000016153 N 0.732
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.732
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.732
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.718
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.732
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.732
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.718
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.732
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.704
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.887
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.732
PK11911.1 Cannabis sativa PK11911.1 N 0.873
ppa010346m Prunus persica ppa010346m N 0.901
SB04G025800 Sorghum bicolor Sb04g025800 N 0.944
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.704
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.718
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.704
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.718
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.873