estExt_gwp.C_920142 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_gwp.C_920142 T51600_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_920142 RRM 29 99

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.845
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.831
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.831
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.831
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.831
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.831
NCBP2 Gallus gallus ENSGALG00000006843 N 0.831
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.831
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.831
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.817
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.817
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.817
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.817
NCBP2 Homo sapiens ENSG00000114503 N 0.817
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.817
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.817
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.817
NCBP2 Equus caballus ENSECAG00000016153 N 0.817
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.817
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.817
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.817
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.817
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.817
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.817
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.817
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.817
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.817
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.817
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.817
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.817
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.817
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.817
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.803
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.803
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.803
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.803
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.803
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.789
PHUM535920 Pediculus humanus PHUM535920 N 0.789
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.789
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.789
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.789
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.789
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.775
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.775
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.775
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.775
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.761
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.761
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.761
AAH72902 Xenopus laevis AAH72902 N 0.761
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.761
P52299 Xenopus laevis P52299 N 0.761
LOAG_03270 Loa loa LOAG_03270 N 0.761
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.761
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.761
91084 Helobdella robusta 91084 N 0.761
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.761
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.761
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.761
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.761
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.761
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.746
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.746
Bm1_02935 Brugia malayi Bm1_02935 N 0.746
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.746
ncbp2 Danio rerio ENSDARG00000014898 N 0.746
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.746
CAA59259 Xenopus laevis CAA59259 N 0.746
2118330B Xenopus laevis 2118330B N 0.746
GI23717 Drosophila mojavensis FBgn0146442 N 0.732
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.732
SB04G025800 Sorghum bicolor Sb04g025800 N 0.732
GK11244 Drosophila willistoni FBgn0213255 N 0.732
GJ23276 Drosophila virilis FBgn0210378 N 0.732
GH15101 Drosophila grimshawi FBgn0122576 N 0.732
GF16759 Drosophila ananassae FBgn0093780 N 0.732
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.732
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.732
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.732
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.732
NCBP2 Sorex araneus ENSSARG00000014294 N 0.732
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.732
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.718
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.718
GE25514 Drosophila yakuba FBgn0242580 N 0.718
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.718
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.718
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.718
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.718
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.718
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.718
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.718
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.718
GJ18756 Drosophila virilis FBgn0205908 N 0.718
Cbp20 Drosophila melanogaster FBgn0022943 N 0.718
GG22670 Drosophila erecta FBgn0114835 N 0.718
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.718
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.718
GL12592 Drosophila persimilis FBgn0150198 N 0.718
GD19204 Drosophila simulans FBgn0190709 N 0.718
GM15280 Drosophila sechellia FBgn0170200 N 0.718
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.704
MDP0000315402 Malus x domestica MDP0000315402 N 0.704
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.704
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.704
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.704
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.704
PK11911.1 Cannabis sativa PK11911.1 N 0.704
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.704
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.704
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.704
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.704
ppa010346m Prunus persica ppa010346m N 0.704