LjSGA_111920.2 (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjSGA_111920.2 T57255_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_111920.2 RRM 1 38

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

2 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.000
A1CF Sus scrofa ENSSSCG00000010431 I 0.000
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.000
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.000
a1cf Danio rerio ENSDARG00000002968 I 0.000
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.000
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.000
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.000
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.000
ENSCJAG00000034583 Callithrix jacchus ENSCJAG00000034583 I 0.000
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.000
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.000
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.000
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.000
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.000
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.000
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.000
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.000
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.000
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.000
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.000
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.000
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.000
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.000
LOC100063743 Equus caballus ENSECAG00000004400 I 0.000
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.000
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.000
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.000
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.000
Rbm46 Mus musculus ENSMUSG00000033882 I 0.000
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.000
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.000
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.000
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.000
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.000
RBM46 Sus scrofa ENSSSCG00000008994 I 0.000
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.000
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.000
RBM46 Sorex araneus ENSSARG00000006520 I 0.000
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.000
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.000
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.000
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.000
RBM46 Felis catus ENSFCAG00000009246 I 0.000
RBM46 Equus caballus ENSECAG00000007649 I 0.000
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.000
RBM46 Echinops telfairi ENSETEG00000014902 I 0.000
RBM46 Homo sapiens ENSG00000151962 D 0.000
Rbm46 Dipodomys ordii ENSDORG00000006405 I 0.000
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.000
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.000
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.000
RBM46 Bos taurus ENSBTAG00000001696 I 0.000
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.000
RBM46 Canis familiaris ENSCAFG00000008473 I 0.000
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.000
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.000
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.000
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.000
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.000
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.000
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.000
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.000
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.000
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.000
RBM47 Danio rerio ENSDARG00000061985 I 0.000
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.000
RBM47 Echinops telfairi ENSETEG00000009194 I 0.000
RBM47 Sus scrofa ENSSSCG00000008796 I 0.000
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.000
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.000
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.000
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.000
Rbm47 Mus musculus ENSMUSG00000070780 I 0.000
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.000
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.000
RBM47 Oryzias latipes ENSORLG00000005847 I 0.000
RBM47 Procavia capensis ENSPCAG00000011879 I 0.000
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.000
RBM47 Sorex araneus ENSSARG00000001735 I 0.000
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.000
RBM47 Felis catus ENSFCAG00000012399 I 0.000
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.000
RBM47 Homo sapiens ENSG00000163694 I 0.000
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.000
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.000
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.000
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.000