CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AFUA_3G13480
(
Aspergillus fumigatus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
CADAFUAG00005171
T60185_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.769
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00005171
S1
13
90
YPEVDSYVMVNVKQIAEMGAYVKLLEYDNIDGMILLSELSRRRIRSIQKLIRIGRNEVVIVLRVDKEKGKCYIDLSKR
Links
Other
S1
family RBPs
Other
Aspergillus fumigatus
RBPs
240 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
114622
Helobdella robusta
114622
I
0.756
12209_YJR007W
Saccharomyces mikatae
12209_YJR007W
I
0.846
12331_YJR007W
Saccharomyces paradoxus
12331_YJR007W
I
0.846
13294_YJR007W
Saccharomyces bayanus
13294_YJR007W
I
0.846
29607.m000238
Ricinus communis
29607.m000238
I
0.744
69770
Aureococcus anophagefferens
69770
I
0.808
72304
Aureococcus anophagefferens
72304
I
0.808
A7TIH9_VANPO
Vanderwaltozyma polyspora
A7TIH9_VANPO
I
0.872
AAEL013675
Aedes aegypti
AAEL013675
I
0.744
AAH46576
Xenopus laevis
AAH46576
I
0.808
AB05699.1
Alternaria brassicicola
AB05699.1
I
0.910
ACLA_041660
Aspergillus clavatus
CADACLAG00004024
I
0.974
AFLA_020350
Aspergillus flavus
CADAFLAG00003920
I
0.974
AGAP011190
Anopheles gambiae
AGAP011190
I
0.769
AGR320W
Ashbya gossypii
AGR320W
I
0.859
AMAG_01618
Allomyces macrogynus
AMAG_01618
I
0.795
AMAG_04113
Allomyces macrogynus
AMAG_04113
I
0.795
amel4_ncbi_hmm23817
Apis mellifera
amel4_ncbi_hmm23817
I
0.782
Ame_R013633
Ailuropoda melanoleuca
Ame_R013633
I
0.808
AMSG_04936
Thecamonas trahens
AMSG_04936
I
0.782
ANIA_03156
Aspergillus nidulans
CADANIAG00009914
I
0.974
AO090012000783
Aspergillus oryzae
CADAORAG00006316
N
0.910
ARB_05709
Arthroderma benhamiae
ARB_05709
I
0.897
AT2G40290
Arabidopsis thaliana
AT2G40290-TAIR-G
I
0.744
ATEG_04051
Aspergillus terreus
CADATEAG00009463
I
0.974
B9HHU6_POPTR
Populus trichocarpa
POPTR_0008s07250
I
0.744
B9HSK1_POPTR
Populus trichocarpa
POPTR_0010s19230
I
0.744
BC1G_14334
Botrytis cinerea
BC1G_14334
I
0.923
BDBG_06604
Blastomyces dermatitidis
BDBG_06604
I
0.923
BGIBMGA004302
Bombyx mori
BGIBMGA004302
I
0.782
BGIOSIBCE010732
Oryza indica
BGIOSIBCE010732
I
0.718
Bm1_04900
Brugia malayi
Bm1_04900
I
0.769
BRADI1G16700
Brachypodium distachyon
BRADI1G16700
I
0.705
BRADI1G65210
Brachypodium distachyon
BRADI1G65210
N
0.705
CAGL0B03795g
Candida glabrata
CAGL0B03795g
I
0.846
CAOG_02542
Capsaspora owczarzaki
CAOG_02542
I
0.738
cassava16515.m1
Manihot esculenta
cassava16515.m1
I
0.731
cassava7658.valid.m1
Manihot esculenta
cassava7658.valid.m1
I
0.756
cassava7659.valid.m1
Manihot esculenta
cassava7659.valid.m1
I
0.756
CC1G_08524
Coprinopsis cinerea
CC1G_08524
I
0.859
Cd36_06510
Candida dubliniensis
Cd36_06510
I
0.833
CHGG_04762
Chaetomium globosum
CHGG_04762
I
0.910
CIMG_00109
Coccidioides immitis
CIMG_00109
I
0.910
CLUG_04130
Candida lusitaniae
CLUG_04130
I
0.846
CPAG_01889
Candida parapsilosis
CPAG_01889
I
0.846
CPIJ011194
Culex quinquefasciatus
CPIJ011194
I
0.769
CpipJ_CPIJ011194
Culex pipiens
CpipJ_CPIJ011194
I
0.769
CPSG_04829
Coccidioides posadasii
CPSG_04829
I
0.910
CTRG_04191
Candida tropicalis
CTRG_04191
I
0.846
Cucsa.239320
Cucumis sativus
Cucsa.239320
I
0.744
DEHA0F26235g
Debaryomyces hansenii
DEHA0F26235g
I
0.846
DGIL_AUG5s12507g4t1
Acyrtosiphon pisum
DGIL_AUG5s12507g4t1
I
0.782
EAT79164.1
Phaeosphaeria nodorum
EAT79164.1
I
0.910
EDP42051.1
Malassezia globosa
EDP42051.1
I
0.808
EFA85538.1
Polysphondylium pallidum
EFA85538.1
I
0.705
eIF-2alpha
Drosophila melanogaster
FBgn0261609
D
0.769
EIF2
Arabidopsis thaliana
AT5G05470-TAIR-G
I
0.705
EIF2S1
Procavia capensis
ENSPCAG00000002613
I
0.808
EIF2S1
Oryzias latipes
ENSORLG00000011844
I
0.808
EIF2S1
Ochotona princeps
ENSOPRG00000004520
I
0.808
EIF2S1
Ornithorhynchus anatinus
ENSOANG00000005409
I
0.808
Eif2s1
Mus musculus
ENSMUSG00000021116
I
0.808
EIF2S1
Loxodonta africana
ENSLAFG00000013423
I
0.808
EIF2S1
Macaca mulatta
ENSMMUG00000021419
I
0.808
EIF2S1
Microcebus murinus
ENSMICG00000010793
I
0.808
EIF2S1
Gasterosteus aculeatus
ENSGACG00000008569
I
0.808
EIF2S1
Gorilla gorilla
ENSGGOG00000001603
I
0.808
EIF2S1
Meleagris gallopavo
ENSMGAG00000011974
I
0.808
EIF2S1
Pan troglodytes
ENSPTRG00000006462
I
0.808
EIF2S1
Pteropus vampyrus
ENSPVAG00000003040
I
0.769
EIF2S1
Spermophilus tridecemlineatus
ENSSTOG00000001565
I
0.808
EIF2S1
Sus scrofa
ENSSSCG00000002289
I
0.808
EIF2S1
Tetraodon nigroviridis
ENSTNIG00000012223
I
0.808
EIF2S1
Takifugu rubripes
ENSTRUG00000017958
I
0.808
EIF2S1
Tarsius syrichta
ENSTSYG00000014171
I
0.769
Eif2s1
Rattus norvegicus
ENSRNOG00000009432
I
0.808
EIF2S1
Tursiops truncatus
ENSTTRG00000015806
I
0.821
eif2s1
Xenopus tropicalis
ENSXETG00000011221
I
0.718
EIF2S1
Sorex araneus
ENSSARG00000011682
I
0.808
EIF2S1
Monodelphis domestica
ENSMODG00000009911
I
0.808
EIF2S1
Taeniopygia guttata
ENSTGUG00000011542
I
0.808
EIF2S1
Homo sapiens
ENSG00000134001
I
0.808
EIF2S1
Echinops telfairi
ENSETEG00000019003
I
0.808
EIF2S1
Anolis carolinensis
ENSACAG00000005994
I
0.808
EIF2S1
Canis familiaris
ENSCAFG00000016386
I
0.808
EIF2S1
Cavia porcellus
ENSCPOG00000003313
I
0.808
eif2s1
Danio rerio
ENSDARG00000052178
I
0.808
Eif2s1
Dipodomys ordii
ENSDORG00000002382
I
0.808
EIF2S1
Erinaceus europaeus
ENSEEUG00000010225
I
0.808
eif2s1l
Danio rerio
ENSDARG00000005827
I
0.808
ENSCHOG00000003744
Choloepus hoffmanni
ENSCHOG00000003744
I
0.782
ENSCHOG00000004230
Choloepus hoffmanni
ENSCHOG00000004230
I
0.782
ENSCHOG00000009030
Choloepus hoffmanni
ENSCHOG00000009030
I
0.795
ENSPPYG00000005921
Pongo pygmaeus
ENSPPYG00000005921
I
0.808
estExt_fgenesh1_kg.C_10157
Myceliophthora thermophila
estExt_fgenesh1_kg.C_10157
I
0.910
estExt_fgenesh1_kg.C_130002
Sporobolomyces roseus
estExt_fgenesh1_kg.C_130002
I
0.859
estExt_fgenesh1_kg.C_70012
Micromonas pusilla
estExt_fgenesh1_kg.C_70012
I
0.769
estExt_fgenesh1_pg.C_20141
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_20141
I
0.923
estExt_fgenesh1_pg.C_210136
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_210136
I
0.910
estExt_fgenesh1_pg.C_210283
Phytophthora capsici
estExt_fgenesh1_pg.C_210283
I
0.756
estExt_fgenesh1_pg.C_Chr_02.00010078
Ostreococcus tauri
estExt_fgenesh1_pg.C_Chr_02.00010078
I
0.744
estExt_fgenesh1_pm.C_210071
Selaginella moellendorfii
estExt_fgenesh1_pm.C_210071
I
0.782
estExt_fgenesh1_pm.C_chr_100036
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_100036
I
0.923
estExt_fgenesh2_kg.C_20112
Fragilariopsis cylindrus
estExt_fgenesh2_kg.C_20112
I
0.808
estExt_fgenesh2_kg.C_21286
Serpula lacrymans
estExt_fgenesh2_kg.C_21286
I
0.872
estExt_fgenesh2_kg.C_40048
Neurospora tetrasperma
estExt_fgenesh2_kg.C_40048
I
0.910
estExt_fgenesh2_pg.C_150109
Monosiga brevicollis
estExt_fgenesh2_pg.C_150109
I
0.782
estExt_fgenesh2_pm.C_120283
Heterobasidion annosum
estExt_fgenesh2_pm.C_120283
I
0.872
estExt_fgenesh2_pm.C_1660010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1660010
I
0.769
estExt_fgenesh2_pm.C_5760005
Branchiostoma floridae
estExt_fgenesh2_pm.C_5760005
I
0.769
estExt_fgenesh2_pm.C_sca_10068
Lottia gigantea
estExt_fgenesh2_pm.C_sca_10068
I
0.756
estExt_fgenesh3_kg.C_30291
Neurospora discreta
estExt_fgenesh3_kg.C_30291
I
0.910
estExt_fgenesh4_pg.C_220183
Volvox carteri
estExt_fgenesh4_pg.C_220183
I
0.795
estExt_Genewise1.C_100122
Postia placenta
estExt_Genewise1.C_100122
I
0.885
estExt_Genewise1.C_100332
Chlorella vulgaris
estExt_Genewise1.C_100332
I
0.782
estExt_Genewise1.C_100430
Trichoderma atroviride
estExt_Genewise1.C_100430
I
0.923
estExt_Genewise1.C_10111
Trichoderma reesei
estExt_Genewise1.C_10111
I
0.923
estExt_Genewise1.C_110295
Coccomyxa C 169
estExt_Genewise1.C_110295
I
0.782
estExt_Genewise1.C_21511
Trichoderma virens
estExt_Genewise1.C_21511
I
0.923
estExt_Genewise1.C_30452
Schizophyllum commune
estExt_Genewise1.C_30452
I
0.859
estExt_Genewise1.C_51162
Mucor circinelloides
estExt_Genewise1.C_51162
I
0.782
estExt_Genewise1Plus.C_10999
Thielavia terrestris
estExt_Genewise1Plus.C_10999
I
0.910
estExt_Genewise1Plus.C_230113
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_230113
I
0.769
estExt_Genewise1Plus.C_2350006
Capitella teleta
estExt_Genewise1Plus.C_2350006
I
0.744
estExt_Genewise1Plus.C_80350
Agaricus bisporus
estExt_Genewise1Plus.C_80350
I
0.872
estExt_Genewise1Plus.C_sca_18_chr2_1_00859
Nectria haematococca
estExt_Genewise1Plus.C_sca_18_chr2_1_00859
I
0.923
estExt_GenewiseH_1.C_750056
Nematostella vectensis
estExt_GenewiseH_1.C_750056
I
0.821
estExt_gwp_gw1.C_3520018
Physcomitrella patens
estExt_gwp_gw1.C_3520018
I
0.769
e_gw.114.57.1
Nematostella vectensis
e_gw.114.57.1
I
0.821
e_gw1.18.114.1
Tremella mesenterica
e_gw1.18.114.1
I
0.782
e_gw1.3.2112.1
Cryphonectria parasitica
e_gw1.3.2112.1
I
0.923
e_gw1.7.228.1
Trichoplax adhaerens
e_gw1.7.228.1
I
0.795
e_gwEuk.2.353.1
Ostreococcus lucimarinus
e_gwEuk.2.353.1
I
0.744
e_gwh1.12.106.1
Laccaria bicolor
e_gwh1.12.106.1
I
0.859
e_gwW.11.341.1
Chlamydomonas reinhardtii
e_gwW.11.341.1
I
0.795
e_gww2.12.213.1
Phanerochaete chrysosporium
e_gww2.12.213.1
I
0.885
fgenesh1_pg.C_scaffold_2000543
Melampsora laricis populina
fgenesh1_pg.C_scaffold_2000543
I
0.833
fgenesh1_pg.scaffold_55000187
Physcomitrella patens
fgenesh1_pg.scaffold_55000187
I
0.795
fgenesh1_pm.00077_#_3
Aspergillus carbonarius
fgenesh1_pm.00077_#_3
I
0.974
fgenesh1_pm.C_scaffold_10000060
Batrachochytrium dendrobatidis
fgenesh1_pm.C_scaffold_10000060
I
0.885
fgenesh1_pm.C_scaffold_69000005
Phytophthora ramorum
fgenesh1_pm.C_scaffold_69000005
I
0.808
fgeneshHS_pg.scaffold_37000098
Naegleria gruberi
fgeneshHS_pg.scaffold_37000098
N
0.705
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263
Emiliania huxleyi
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263
I
0.769
FGSG_06220
Fusarium graminearum
FGSG_06220
I
0.910
FOXG_08491
Fusarium oxysporum
FOXG_08491
I
0.923
FVEG_06185
Fusarium verticillioides
FVEG_06185
I
0.923
GA22144-RA
Drosophila pseudoobscura
FBgn0082124
I
0.769
GD15749
Drosophila simulans
FBgn0187410
I
0.769
GE15968
Drosophila yakuba
FBgn0233524
I
0.769
genemark.2222_g
Pleurotus ostreatus
genemark.2222_g
I
0.885
GF19374
Drosophila ananassae
FBgn0096384
I
0.769
GG19321
Drosophila erecta
FBgn0111525
I
0.769
GI21763
Drosophila mojavensis
FBgn0144493
I
0.769
GJ19141
Drosophila virilis
FBgn0206286
I
0.769
GK25248
Drosophila willistoni
FBgn0227207
I
0.769
GL20268
Drosophila persimilis
FBgn0157863
I
0.769
GLRG_02833
Colletotrichum graminicola
GLRG_02833
I
0.910
Glyma11g35600.1
Glycine max
Glyma11g35600.1
I
0.744
Glyma18g02820.1
Glycine max
Glyma18g02820.1
I
0.744
GM13399
Drosophila sechellia
FBgn0168330
I
0.769
GRMZM2G058138
Zea mays
GRMZM2G058138
I
0.718
GRMZM2G083262
Zea mays
GRMZM2G083262
I
0.718
GSTUMT00002346001
Tuber melanosporum
GSTUMT00002346001
I
0.923
GSVIVG00024676001
Vitis vinifera
GSVIVG00024676001
I
0.744
HCAG_01136
Histoplasma capsulatum
HCAG_01136
I
0.910
IF2A_BOVIN
Bos taurus
ENSBTAG00000016311
I
0.808
IF2A_CHICK
Gallus gallus
ENSGALG00000009565
I
0.808
IF2A_RABIT
Oryctolagus cuniculus
ENSOCUG00000012023
I
0.808
IGS.gm_12_00191
Chlorella NC64A
IGS.gm_12_00191
I
0.769
ISCW017360
Ixodes scapularis
ISCW017360
I
0.795
KLLA0A11814g
Kluyveromyces lactis
KLLA0A11814g
I
0.846
KLTH0B02002g
Kluyveromyces thermotolerans
KLTH0B02002g
I
0.885
Kwal_15422
Kluyveromyces waltii
Kwal_15422
I
0.885
LELG_00811
Lodderomyces elongisporus
LELG_00811
I
0.846
LjSGA_031492.1
Lotus japonicus
LjSGA_031492.1
I
0.744
LOAG_09556
Loa loa
LOAG_09556
I
0.769
LOC100052709
Equus caballus
ENSECAG00000018424
I
0.808
LOC100399114
Callithrix jacchus
ENSCJAG00000015368
I
0.808
LOC_Os03g18510
Oryza sativa
LOC_Os03g18510
I
0.718
MCYG_00123
Microsporum canis
MCYG_00123
I
0.897
MDP0000155133
Malus x domestica
MDP0000155133
I
0.718
MDP0000663428
Malus x domestica
MDP0000663428
I
0.744
Medtr3g094720
Medicago truncatula
Medtr3g094720
I
0.744
Medtr3g094730
Medicago truncatula
Medtr3g094730
I
0.744
Medtr3g094740
Medicago truncatula
Medtr3g094740
I
0.744
mgf006782m
Mimulus guttatus
mgf006782m
I
0.731
MGG_13200
Magnaporthe oryzae
MGG_13200
I
0.897
MGYG_00686
Microsporum gypseum
MGYG_00686
I
0.897
nasonia_NCBI_hmm338664
Nasonia vitripennis
nasonia_NCBI_hmm338664
I
0.782
NCU08277
Neurospora crassa
NCU08277
I
0.910
NFIA_063860
Neosartorya fischeri
CADNFIAG00005762
I
0.974
PASA_GEN_0500123
Daphnia pulex
PASA_GEN_0500123
I
0.795
Pa_6_5980
Podospora anserina
Pa_6_5980
I
0.910
PGTG_13830
Puccinia graminis
PGTG_13830
N
0.782
PGUG_00485
Candida guilliermondii
PGUG_00485
I
0.821
PHATRDRAFT_34538
Phaeodactylum tricornutum
Phatr34538
I
0.795
PHUM551010
Pediculus humanus
PHUM551010
I
0.782
PITG_07885
Phytophthora infestans
PITG_07885
I
0.808
PK10564.1
Cannabis sativa
PK10564.1
I
0.744
PMAA_021520
Penicillium marneffei
PMAA_021520
I
0.949
ppa008120m
Prunus persica
ppa008120m
I
0.744
PredSwiss_EST393.1
Pneumocystis carinii
PredSwiss_EST393.1
I
0.846
PTRG_05239
Pyrenophora tritici repentis
PTRG_05239
I
0.910
PTSG_05806
Salpingoeca rosetta
PTSG_05806
I
0.705
Q7ZTK4
Xenopus laevis
Q7ZTK4
I
0.808
RO3G_12494
Rhizopus oryzae
RO3G_12494
I
0.782
RO3G_13185
Rhizopus oryzae
RO3G_13185
I
0.782
SAKL0G14058g
Lachancea kluyveri
SAKL0G14058g
I
0.872
SB01G038230
Sorghum bicolor
Sb01g038230
I
0.718
Scas_Contig479.2
Saccharomyces castellii
Scas_Contig479.2
I
0.846
Scas_Contig617.9
Saccharomyces castellii
Scas_Contig617.9
I
0.846
SJAG_03629
Schizosaccharomyces japonicus
SJAG_03629
I
0.821
Skud_Contig1955.10
Saccharomyces kudriavzevii
Skud_Contig1955.10
I
0.833
SNOG_13280
Stagonospora nodorum
SNOG_13280
I
0.910
SOCG_01617
Schizosaccharomyces octosporus
SOCG_01617
I
0.821
SPOG_03916
Schizosaccharomyces cryophilus
SPOG_03916
I
0.821
SPPG_00622
Spizellomyces punctatus
SPPG_00622
I
0.859
SS1G_13048
Sclerotinia sclerotiorum
SS1G_13048
I
0.889
SUI2
Saccharomyces cerevisiae
YJR007W
I
0.846
SUI2
Candida albicans
orf19.6213
I
0.833
TEQG_01370
Trichophyton equinum
TEQG_01370
I
0.897
TERG_00559
Trichophyton rubrum
TERG_00559
I
0.897
TESG_05324
Trichophyton tonsurans
TESG_05324
I
0.897
THAPSDRAFT_105
Thalassiosira pseudonana
Thaps105
I
0.782
tif211
Schizosaccharomyces pombe
SPAC3G9.09c
I
0.821
TRV_03711
Trichophyton verrucosum
TRV_03711
I
0.897
UM01463
Ustilago maydis
UM01463
I
0.821
UREG_00217
Uncinocarpus reesii
UREG_00217
I
0.910
VDAG_01930
Verticillium dahliae
VDAG_01930
I
0.910
VDBG_01622
Verticillium albo atrum
VDBG_01622
I
0.910
WUBG_12485
Wuchereria bancrofti
WUBG_12485
I
0.769
XM_002881666.1
Arabidopsis lyrata
fgenesh2_kg.4__2141__AT2G40290.1
I
0.744
XP_001176254.1
Strongylocentrotus purpuratus
XP_001176254.1
I
0.731
XP_001176396.1
Strongylocentrotus purpuratus
XP_001176396.1
I
0.731
XP_002156465.1
Hydra magnipapillata
XP_002156465.1
I
0.782
XP_002492289.1
Pichia pastoris
XP_002492289.1
I
0.872
XP_779939.1
Strongylocentrotus purpuratus
XP_779939.1
I
0.731
XP_801812.1
Strongylocentrotus purpuratus
XP_801812.1
I
0.731
YALI0B01034g
Yarrowia lipolytica
YALI0B01034g
I
0.808
ZYRO0G12056g
Zygosaccharomyces rouxii
ZYRO0G12056g
I
0.872