CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LARP4B
(
Sus scrofa
)
La
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
IPR006630
ENSSSCG00000011162
T22852_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000011910
La
113
170
LKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSL
Links
Other
La
family RBPs
Other
Sus scrofa
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002882862.1
Arabidopsis lyrata
fgenesh2_kg.3__1628__AT3G15010.2
N
0.000
XM_002894385.1
Arabidopsis lyrata
scaffold_105150.1
N
0.000
AT3G15010
Arabidopsis thaliana
AT3G15010-TAIR-G
N
0.000
BRADI2G43460
Brachypodium distachyon
BRADI2G43460
N
0.000
PK03611.1
Cannabis sativa
PK03611.1
N
0.000
PK28408.1
Cannabis sativa
PK28408.1
N
0.000
Cucsa.273510
Cucumis sativus
Cucsa.273510
N
0.000
Glyma12g19050.1
Glycine max
Glyma12g19050.1
N
0.000
Glyma06g33940.1
Glycine max
Glyma06g33940.1
N
0.000
chr3.CM0282.340.nc
Lotus japonicus
chr3.CM0282.340.nc
N
0.000
MDP0000709988
Malus x domestica
MDP0000709988
N
0.000
MDP0000293302
Malus x domestica
MDP0000293302
N
0.000
MDP0000250519
Malus x domestica
MDP0000250519
N
0.000
MDP0000245564
Malus x domestica
MDP0000245564
N
0.000
MDP0000575061
Malus x domestica
MDP0000575061
N
0.000
MDP0000596919
Malus x domestica
MDP0000596919
N
0.000
MDP0000410930
Malus x domestica
MDP0000410930
N
0.000
MDP0000601282
Malus x domestica
MDP0000601282
N
0.000
cassava28996.valid.m1
Manihot esculenta
cassava28996.valid.m1
N
0.000
cassava18809.valid.m1
Manihot esculenta
cassava18809.valid.m1
N
0.000
cassava28994.valid.m1
Manihot esculenta
cassava28994.valid.m1
N
0.000
cassava28995.valid.m1
Manihot esculenta
cassava28995.valid.m1
N
0.000
mgf005844m
Mimulus guttatus
mgf005844m
N
0.000
mgf018937m
Mimulus guttatus
mgf018937m
N
0.000
mgf011517m
Mimulus guttatus
mgf011517m
N
0.000
LOC_Os01g42820
Oryza sativa
LOC_Os01g42820
N
0.000
B9GGV7_POPTR
Populus trichocarpa
POPTR_0001s38640
N
0.000
29900.m001607
Ricinus communis
29900.m001607
N
0.000
SB03G027820
Sorghum bicolor
Sb03g027820
N
0.000
GRMZM2G117715
Zea mays
GRMZM2G117715
N
0.000
GRMZM2G049866
Zea mays
GRMZM2G049866
N
0.000