RBM47_CANFA (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000015898 T35135_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.931
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.901
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000023389 RRM 75 143
ENSCAFP00000023389 RRM 155 222
ENSCAFP00000023389 RRM 250 314

Links

Other RRM family RBPs
Other Canis familiaris RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.733
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.970
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.926
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.728
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.970
RBM46 Bos taurus ENSBTAG00000001696 I 0.733
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.721
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.724
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.719
ENSCJAG00000034583 Callithrix jacchus ENSCJAG00000034583 I 0.730
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.965
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.733
RBM46 Canis familiaris ENSCAFG00000008473 I 0.733
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.712
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.713
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.724
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.975
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.718
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.733
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.965
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.713
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.723
RBM47 Danio rerio ENSDARG00000061985 I 0.876
a1cf Danio rerio ENSDARG00000002968 I 0.704
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.728
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.970
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.832
RBM47 Echinops telfairi ENSETEG00000009194 I 0.965
RBM46 Echinops telfairi ENSETEG00000014902 I 0.733
RBM46 Equus caballus ENSECAG00000007649 I 0.734
LOC100063743 Equus caballus ENSECAG00000004400 I 0.946
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.718
RBM46 Felis catus ENSFCAG00000009246 I 0.723
RBM47 Felis catus ENSFCAG00000012399 I 0.970
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.931
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.709
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.861
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.733
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.970
RBM47 Homo sapiens ENSG00000163694 I 0.970
RBM46 Homo sapiens ENSG00000151962 D 0.733
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.733
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.970
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.733
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.970
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.733
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.950
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.931
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.872
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.828
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.950
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.733
Rbm46 Mus musculus ENSMUSG00000033882 I 0.733
Rbm47 Mus musculus ENSMUSG00000070780 I 0.950
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.728
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.946
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.709
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.733
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.980
RBM47 Oryzias latipes ENSORLG00000005847 I 0.871
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.733
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.970
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.733
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.956
RBM47 Procavia capensis ENSPCAG00000011879 I 0.970
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.970
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.733
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.946
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.733
RBM46 Sorex araneus ENSSARG00000006520 I 0.733
RBM47 Sorex araneus ENSSARG00000001735 I 0.980
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.881
RBM46 Sus scrofa ENSSSCG00000008994 I 0.733
RBM47 Sus scrofa ENSSSCG00000008796 I 0.970
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.931
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.713
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.876
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.704
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.733
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.876
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.704
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.723
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.866
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.728
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.970
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.901